Methods for visualization and statistics on DNA methylation data


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Documentation for package ‘methVisual’ version 1.24.0

Help Pages

cgInAlign Amount of CpGs
cgMethFinder Methylation status
Cooccurrence Visualization of binary methylation data
coversionGenom Sequence conversion
findNonAligned Aligned CpG positions
heatMapMeth HeatMap diagram over methylation data
makeDataMethGFF GFF methylation files
makeLocalExpDir Saving example data
makeTabFilePath Tab delimited text file
matrixSNP Correlation between methylation states
MethAlignNW Summary of methylation states
methCA CA on methylation
methData BiQAnalyzer dataset
MethDataInput Sequences match control
methFisherTest Fisher exact Test on methylation Data
MethLollipops "Lollipops" Methylation plot
methWhitneyUTest Mann Whitney U-Test on methylation data
MethylQC Quality controle (QC) on Methylation Data
plotAbsMethyl Plot number mathylation on CpGs positions
plotMatrixSNP Plot of methylation states dependencies
readBisulfFASTA Read multiple FASTA file
selectRefSeq Uploading genomic sequence