A tool for computing genotype-phenotype associations using statistical learning techniques


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Documentation for package ‘genphen’ version 1.0.0

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genotype.saap SAAP genotype dataset
genotype.saap.msa SAAP genotype dataset (msa)
genotype.snp SNP genotype dataset
genotype.snp.msa SNP genotype dataset (msa)
phenotype.saap Phenotype dataset
phenotype.snp Phenotype dataset
plotGenphenResults Visualizing GWAS results
plotManhattan Visualizing genphen results with Manhattan plots
plotSpecificGenotype Visualizing specific genotypes
runGenphenSaap Performing genetic association analysis between SAAPs and phenotypes
runGenphenSnp Performing genetic association analysis between SNPs and phenotypes