Package: VariantFiltering
Type: Package
Title: Filtering of coding and non-coding genetic variants
Description: Filter genetic variants using different criteria such as
             inheritance model, amino acid change consequence, minor
             allele frequencies across human populations, splice site
             strength, conservation, etc.
Version: 1.8.6
Authors@R: c(person("Robert", "Castelo", role=c("aut", "cre"), email="robert.castelo@upf.edu"),
             person("Dei", "Martinez Elurbe", role="ctb"),
             person("Pau", "Puigdevall", role="ctb"))
License: Artistic-2.0
Depends: R (>= 3.0.0), methods, BiocGenerics (>= 0.13.8),
        VariantAnnotation (>= 1.13.29)
Imports: utils, DBI, RSQLite (>= 1.0.0), Biobase, S4Vectors (>=
        0.9.25), IRanges (>= 2.3.23), RBGL, graph, AnnotationDbi,
        BiocParallel, Biostrings (>= 2.33.11), GenomeInfoDb (>= 1.3.6),
        GenomicRanges (>= 1.19.13), SummarizedExperiment,
        GenomicFeatures, Rsamtools (>= 1.17.8), BSgenome, Gviz, shiny
Suggests: RUnit, BiocStyle, org.Hs.eg.db,
        BSgenome.Hsapiens.1000genomes.hs37d5,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP144.GRCh37,
        MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r0.3.1.snvs.hs37d5,
        phastCons100way.UCSC.hg19, PolyPhen.Hsapiens.dbSNP131,
        SIFT.Hsapiens.dbSNP137
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
LazyData: yes
URL: https://github.com/rcastelo/VariantFiltering
BugReports: https://github.com/rcastelo/VariantFiltering/issues
biocViews: Genetics, Homo_sapiens, Annotation, SNP, Sequencing,
        HighThroughputSequencing
NeedsCompilation: yes
Packaged: 2016-08-07 04:18:42 UTC; biocbuild
Author: Robert Castelo [aut, cre],
  Dei Martinez Elurbe [ctb],
  Pau Puigdevall [ctb]
Maintainer: Robert Castelo <robert.castelo@upf.edu>
Built: R 3.3.1; x86_64-apple-darwin13.4.0; 2016-08-07 15:12:56 UTC; unix
