Transcriptome instability analysis


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Documentation for package ‘TIN’ version 1.4.1

Help Pages

aberrantExonUsage Calculations of relative aberrant exon usage amounts per sample (based on FIRMA scores)
clusterPlot clusterPlot
correlation Calculates the correlation between sample-wise amounts of aberrant exon usage and splicing factor expression levels
correlationPlot correlationPlot
firmaAnalysis Read CEL files and perform FIRMA analysis
geneAnnotation geneAnnotation
geneSetCorrelation Correlation between aberrant exon usage and expression levels for a number of gene sets.
geneSets geneSets
posNegCorrPlot posNegCorrPlot
probesetPermutations Permutations of the samples at each probeset
readGeneSummaries Read gene-level expression summaries
sampleSetFirmaScores sampleSetFirmaScores
sampleSetGeneSummaries sampleSetGeneSummaries
scatterPlot Scatterplot showing relative amounts of aberrant exon usage per sample
splicingFactors A list of 280 splicing factor genes