Classes and methods for multi-omics data integration


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Documentation for package ‘STATegRa’ version 1.6.2

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STATegRa-package STATegRa
bioDist bioDist
bioDist-method bioDist
bioDistclass bioDistclass
bioDistFeature bioDistFeature
bioDistFeature-method bioDistFeature
bioDistFeaturePlot bioDistFeaturePlot
bioDistW bioDistW
bioDistW-method bioDistW
bioDistWPlot bioDistWPlot
bioDistWPlot-method bioDistWPlot
bioMap bioMap
biplotRes Biplot of component analysis
biplotRes-method Biplot of component analysis
Block1 STATegRa data
Block1.PCA STATegRa data
Block2 STATegRa data
Block2.PCA STATegRa data
caClass-class caClass
createOmicsExpressionSet createOmicsExpressionSet
createOmicsExpressionSet-method createOmicsExpressionSet
ed STATegRa data
ed.PCA STATegRa data
getInitialData Retrieve initial data from caClass objects
getInitialData-method Retrieve initial data from caClass objects
getLoadings Retrieve component analysis loadings
getLoadings-method Retrieve component analysis loadings
getMethodInfo Retrieve information about component analysis method
getMethodInfo-method Retrieve information about component analysis method
getPreprocessing Retrieve information about preprocessing
getPreprocessing-method Retrieve information about preprocessing
getScores Retrieve component analysis scores
getScores-method Retrieve component analysis scores
getVAF Retrieve information abotut VAF
getVAF-method Retrieve information abotut VAF
holistOmics HolistOmics an application of NPC on omics datasets
holistOmics-method HolistOmics an application of NPC on omics datasets
mapdata STATegRa data
modelSelection Find optimal common and distinctive components
modelSelection-method Find optimal common and distinctive components
omicsCompAnalysis Components analysis for multiple objects
omicsCompAnalysis-method Components analysis for multiple objects
PCA.selection Select an optimal number of components using PCA
PCA.selection-method Select an optimal number of components using PCA
plotRes Plot component analysis results
plotRes-method Plot component analysis results
plotVAF Plot VAF (Variance Explained For) from Component Analysis
plotVAF-method Plot VAF (Variance Explained For) from Component Analysis
selectCommonComps Select common components in two data blocks
selectCommonComps-method Select common components in two data blocks
STATegRa STATegRa
STATegRaUsersGuide STATegRaUsersGuide
STATegRa_data STATegRa data
STATegRa_data_TCGA_BRCA STATegRa data
TCGA_BRCA_Data STATegRa data