MultiDataSet-package | MultiDataSet: Implementation of the BRGE's basic classes |
add-rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'. |
add_eset | Method to add an 'eSet' to 'MultiDataSet'. |
add_eset-method | MultiDataSet instances |
add_genexp | Method to add an expression microarray dataset to 'MultiDataSet'. |
add_genexp-method | MultiDataSet instances |
add_methy | Method to add a slot of methylation to 'MultiDataSet'. |
add_methy-method | MultiDataSet instances |
add_rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'. |
add_rnaseq-method | MultiDataSet instances |
add_rse | Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'. |
add_rse-method | MultiDataSet instances |
add_snps | Method to add a slot of SNPs to 'MultiDataSet'. |
add_snps-method | MultiDataSet instances |
as.list | MultiDataSet instances |
as.list-method | MultiDataSet instances |
assayData | MultiDataSet instances |
assayData-method | MultiDataSet instances |
betas | MethylationSet instances |
betas-method | MethylationSet instances |
checkProbes | Filter 'MethylationSet' probes |
checkProbes-method | MethylationSet instances |
checkSamples | Modify a 'MethylationSet' to only contain common samples |
checkSamples-method | MethylationSet instances |
chrNumToChar | Convert chr numbers to chr strings |
commonIds | Get the name of the ids common to all datasets |
commonIds-method | MultiDataSet instances |
commonSamples | Method to select samples that are present in all datasets. |
commonSamples-method | MultiDataSet instances |
createMultiDataSet | MultiDataSet instances |
fData | MultiDataSet instances |
fData-method | MultiDataSet instances |
getMs | Transforms beta values to M-values |
getMs-method | MethylationSet instances |
length | MultiDataSet instances |
length-method | MultiDataSet instances |
MethylationSet | MethylationSet instances |
methylationSet | MethylationSet instances |
MethylationSet-class | MethylationSet instances |
MethylationSet-methods | MethylationSet instances |
MultiDataSet | MultiDataSet: Implementation of the BRGE's basic classes |
MultiDataSet-class | MultiDataSet instances |
MultiDataSet-methods | MultiDataSet instances |
MultiDataSet-methods, | MultiDataSet instances |
names | MultiDataSet instances |
names-method | MultiDataSet instances |
pData | MultiDataSet instances |
pData-method | MultiDataSet instances |
prepareMethylationSet | Generating a 'MethylationSet' |
rowRanges | MultiDataSet instances |
rowRanges-method | MultiDataSet instances |
sampleNames-method | MultiDataSet instances |
[ | MultiDataSet instances |
[-method | MultiDataSet instances |
[[-method | MultiDataSet instances |