bhattacharyyaCoefficient | Bhattacharyya coefficient |
bhattacharyyaMatrix | Bhattacharyya matrix |
chordDiagramVDJ | Chord diagram of VJ or DJ gene associations |
clonality | Clonality |
cloneTrack | Clone tracking plot |
commonSeqs | Common sequences in two or more samples |
commonSeqsPlot | Common sequences plot |
commonSeqsVenn | Common sequences Venn diagram |
geneFreq | Gene frequencies |
lorenzCurve | Lorenz curve |
mergeFiles | Merge files |
pairwisePlot | Pairwise comparison plot |
productive | Productive sequences |
productiveSeq | Productive sequences |
readImmunoSeq | Read ImmunoSeq files |
removeSeq | Remove sequence |
searchPublished | Search for T cell receptor beta CDR3 amino acid sequences with known antigen specificity |
searchSeq | Search for a sequence |
seqMatrix | Sequence matrix |
similarityMatrix | Similarity score matrix |
similarityScore | Similarity score |
topFreq | Top frequencies |
topSeqs | Top sequences |
topSeqsPlot | Cumulative frequency bar plot of top sequences |
uniqueSeqs | Unique sequences |