Distributed computing by file or by range


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Documentation for package ‘GenomicFiles’ version 1.8.0

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class:GenomicFiles GenomicFiles objects
colData<--method GenomicFiles objects
dimnames<--method GenomicFiles objects
files-method GenomicFiles objects
files<- GenomicFiles objects
files<--method GenomicFiles objects
findTypeRegistry Functions for creating and searching a registry of file types.
GenomicFiles GenomicFiles objects
GenomicFiles-class GenomicFiles objects
GenomicFiles-method GenomicFiles objects
isPacked Range transformations of a 'GenomicRanges' object for optimal file queries.
makeFileType Functions for creating and searching a registry of file types.
pack Range transformations of a 'GenomicRanges' object for optimal file queries.
pack-method Range transformations of a 'GenomicRanges' object for optimal file queries.
reduceByFile Parallel computations by files
reduceByFile-method Parallel computations by files
reduceByRange Parallel computations by ranges
reduceByRange-method Parallel computations by ranges
reduceByYield Iterate through a BAM (or other) file, reducing output to a single result.
reduceFiles Parallel computations by files
reduceRanges Parallel computations by ranges
REDUCEsampler Iterate through a BAM (or other) file, reducing output to a single result.
registerFileType Functions for creating and searching a registry of file types.
registry-utils Functions for creating and searching a registry of file types.
show-method GenomicFiles objects
unpack Un-pack results obtained with a pack()ed group of ranges
unpack-method Un-pack results obtained with a pack()ed group of ranges
[-method GenomicFiles objects