GUIDE-seq analysis pipeline


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Documentation for package ‘GUIDEseq’ version 1.2.1

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GUIDEseq-package Analysis of GUIDE-seq
combineOfftargets Combine Offtargets
getPeaks Obtain peaks from GUIDE-seq
getUniqueCleavageEvents Using UMI sequence to obtain the starting sequence library
GUIDEseq Analysis of GUIDE-seq
GUIDEseqAnalysis Analysis pipeline for GUIDE-seq dataset
mergePlusMinusPeaks Merge peaks from plus strand and minus strand
offTargetAnalysisOfPeakRegions Offtarget Analysis of GUIDE-seq peaks
peaks.gr example cleavage sites
uniqueCleavageEvents example unique cleavage sites