bmiq.mc |
A multi-processor wrapper of BMIQ method |
ComBat.mc |
A multi-processor wrapper for ComBat method. |
freqpoly |
Frequency polygon plot |
multifreqpoly |
Frequency polygon plot to display data distribution. |
nmode.mc |
Estimating number of mode in methylaion data for each probe. |
norm.quantile |
Quantile normalization. |
normalize.quantile.450k |
Quantile normalization. |
pcrplot |
Principal component regression plot |
plotCtrl |
Plot internal controls of 450K or MethylationEPIC BeadChip. |
preprocessENmix |
The ENmix background correction for HumanMethylation 450 and MethylationEPIC BeadChip |
QCfilter |
Sample or CpG probe filter. |
QCinfo |
QC information. |
rcp |
Regression on Correlated Probes(RCP) |
rm.outlier |
Filtering out outlier and/or low quality values |