$-method | MatrixList object |
colnames-method | MatrixList object |
colnames<--method | MatrixList object |
common_dispersion | dmDSdispersion object |
common_dispersion-method | dmDSdispersion object |
common_dispersion<- | dmDSdispersion object |
common_dispersion<--method | dmDSdispersion object |
counts-method | dmDSdata object |
data_dmDSdata | Sample data for differential splicing analysis |
data_dmSQTLdata | Sample data for sQTL analysis |
dim-method | MatrixList object |
dmDispersion | Estimate dispersions in Dirichlet-multinomial model |
dmDispersion-method | Estimate dispersions in Dirichlet-multinomial model |
dmDSdata | Create dmDSdata object Constructor function for a 'dmDSdata' object. |
dmDSdata-class | dmDSdata object |
dmDSdispersion-class | dmDSdispersion object |
dmDSfit-class | dmDSfit object |
dmDStest-class | dmDStest object |
dmFilter | Filtering |
dmFilter-method | Filtering |
dmFit | Estimate proportions in Dirichlet-multinomial model |
dmFit-method | Estimate proportions in Dirichlet-multinomial model |
dmSQTLdata | Create dmSQTLdata object |
dmSQTLdata-class | dmSQTLdata object |
dmSQTLdataFromRanges | Create dmSQTLdata object |
dmSQTLdispersion-class | dmSQTLdispersion object |
dmSQTLfit-class | dmSQTLfit object |
dmSQTLtest-class | dmSQTLtest object |
dmTest | Likelihood ratio test |
dmTest-method | Likelihood ratio test |
dm_counts | dmDSdata object |
dm_counts-method | dmDSdata object |
dm_plotDataDSInfo | Plot the frequency of present features |
dm_plotProportions | Plot feature proportions |
dm_samples | dmDSdata object |
dm_samples-method | dmDSdata object |
elementNROWS-method | MatrixList object |
genewise_dispersion | dmDSdispersion object |
genewise_dispersion-method | dmDSdispersion object |
genewise_dispersion<- | dmDSdispersion object |
genewise_dispersion<--method | dmDSdispersion object |
length-method | MatrixList object |
length-method | dmDSdata object |
length-method | dmSQTLdata object |
MatrixList-class | MatrixList object |
mean_expression | dmDSdispersion object |
mean_expression-method | dmDSdispersion object |
names-method | MatrixList object |
names-method | dmDSdata object |
names-method | dmSQTLdata object |
names<--method | MatrixList object |
ncol-method | MatrixList object |
nrow-method | MatrixList object |
plotData | Plot data summary |
plotData-method | Plot data summary |
plotDispersion | Dispersion versus mean expression plot |
plotDispersion-method | Dispersion versus mean expression plot |
plotFit | Plot feature proportions |
plotFit-method | Plot feature proportions |
plotTest | Plot p-values distribution |
plotTest-method | Plot p-values distribution |
proportions | dmDSfit object |
proportions-method | dmDSfit object |
proportions-method | dmDStest object |
results | dmDStest object |
results-method | dmDStest object |
results-method | dmSQTLtest object |
rownames-method | MatrixList object |
rownames<--method | MatrixList object |
samples | dmDSdata object |
samples-method | dmDSdata object |
statistics | dmDSfit object |
statistics-method | dmDSfit object |
statistics-method | dmDStest object |
[-method | MatrixList object |
[-method | dmDSdata object |
[-method | dmSQTLdata object |
[[-method | MatrixList object |