ChAMP-package |
ChAMP-Chip Analysis Methylation Pipeline |
ChAMP |
ChAMP-Chip Analysis Methylation Pipeline |
champ.CNA |
Inference of Copy Number Abberrations from intensity values. |
champ.DMR |
Applying Bumphunter or ProbeLasso Algorithms to detect Different Methylation Regions in a beta valued Methylation Dataset. |
champ.load |
Upload of raw HumanMethylation450 data from IDAT files. |
champ.MVP |
Identify Most Variable Positions in Illumina HumanMethylation450 data. |
champ.norm |
Normalization of HumanMethylation450 data |
champ.process |
Process function to run all methods in ChAMP pipeline. |
champ.refbase |
Applying References-Base Methold to beta valued methylation data. |
champ.reffree |
Applying RefFreeEWAS Methold to beta valued methylation data. |
champ.runCombat |
Function that uses ComBat to correct for batch effects related to slide/BeadChip. |
champ.SVD |
Singular Value Decomposition analysis for batch effects prediciton in HumanMethylation450 data |
champ.TrueMethyl |
Identify Most Variable Positions between oxBS TrueMethyl Samples and BS samples in Illumina HumanMethylation450 data. |