Package: ChAMP
Type: Package
Title: Chip Analysis Methylation Pipeline for Illumina
        HumanMethylation450 and EPIC
Version: 1.10.0
Date: 2016-04-25
Description: The package includes quality control metrics, a selection
        of normalization methods and novel methods to identify
        differentially methylated regions and to highlight copy number
        alterations. In addition there is a method to help calculate hmC using BS and oxBS samples.
Authors@R: c(person("Tiffany", "Morris", role = c("cre", "aut"),
                    email = "champ450k@gmail.com"),
		person("Tian","Yuan",role = "aut"),
             person("Lee", "Stirling", role = "ctb"),
             person("Andrew", "Feber", role = "ctb"),
	     person("Andrew", "Teschendorff", role = "ctb"),
	     person("Ankur", "Chakravarthy", role = "ctb"))
License: GPL-3
Depends: R (>= 3.2), minfi, ChAMPdata, Illumina450ProbeVariants.db
Imports: sva, IlluminaHumanMethylation450kmanifest, limma,RPMM,
        DNAcopy, preprocessCore, impute, marray, wateRmelon, plyr,
        GenomicRanges,RefFreeEWAS,qvalue,isva,doParallel,bumphunter,quadprog
biocViews: Microarray, MethylationArray, Normalization, TwoChannel,
        CopyNumber, DNAMethylation
Author: Tiffany Morris [cre, aut],
  Yuan Tian [aut],
  Lee Stirling [ctb],
  Andrew Feber [ctb],
  Andrew Teschendorff [ctb],
  Ankur Chakravarthy [ctb]
Maintainer: Yuan Tian, Tiffany Morris <champ450k@gmail.com>
NeedsCompilation: no
Packaged: 2016-05-04 04:02:23 UTC; biocbuild
Built: R 3.3.0; ; 2016-05-04 14:30:07 UTC; unix
