Package: PscanRBackgrounds
Type: Package
Title: Precomputed Promoter Backgrounds for PscanR
Version: 0.99.7
Authors@R: c(
    person("Federico", "Zambelli",
        email = "federico.zambelli@unimi.it",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0003-3487-4331")),
    person("Diana", "Betelli", role = "aut",
        comment = c(ORCID = "0009-0007-6207-7715")),
    person("Giulio", "Pavesi", role = "aut",
        comment = c(ORCID = "0000-0001-5705-6249")),
    person("Italy's National Recovery and Resilience Plan (PNRR)",
        role = "fnd", comment = "project ELIXIRNextGenIT, R0000010")
    )
Description: Provides ExperimentHub metadata and documentation for the
    promoter-background score distributions used by PscanR transcription
    factor binding motif enrichment analyses. Each of the 105 backgrounds is a
    separate ExperimentHub resource, covering the JASPAR 2020, 2022 and 2024
    CORE collections, seven genome assemblies of five organisms, and five
    promoter windows. The files are hosted on Zenodo, one record per JASPAR
    release, and archived together in a version-specific Zenodo record.
License: CC BY 4.0
Encoding: UTF-8
Depends: R (>= 4.6.0)
Imports: ExperimentHub
Suggests: BiocStyle, ExperimentHubData, knitr, rmarkdown, testthat (>=
        3.0.0)
biocViews: ExperimentHub, Genome, Homo_sapiens_Data, Mus_musculus_Data,
        Drosophila_melanogaster_Data, Saccharomyces_cerevisiae_Data,
        Arabidopsis_thaliana_Data
VignetteBuilder: knitr
URL: https://github.com/Federico77z/PscanRBackgrounds,
        https://doi.org/10.5281/zenodo.21821764
BugReports: https://github.com/Federico77z/PscanRBackgrounds/issues
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/PscanRBackgrounds
git_branch: devel
git_last_commit: a2ca51d
git_last_commit_date: 2026-11-06
Repository: Bioconductor 3.24
Date/Publication: 2026-11-10
NeedsCompilation: no
Packaged: 2026-11-10 16:44:57 UTC; biocbuild
Author: Federico Zambelli [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3487-4331>),
  Diana Betelli [aut] (ORCID: <https://orcid.org/0009-0007-6207-7715>),
  Giulio Pavesi [aut] (ORCID: <https://orcid.org/0000-0001-5705-6249>),
  Italy's National Recovery and Resilience Plan (PNRR) [fnd] (project
    ELIXIRNextGenIT, R0000010)
Maintainer: Federico Zambelli <federico.zambelli@unimi.it>
