Package: methylTFRAnnotationHg38
Title: methylTFR Annotations for hg38
Description: Precomputed transcription factor binding sites, motif GC
    frequency tables and a genome-wide GC distribution for use with the
    methylTFR package. Binding sites are genome-wide motif matches
    extended to the footprint window methylTFR reads across; the GC
    tables record how each motif's sites distribute over genome-wide GC
    quintiles, which is what allows a deviation score to be corrected
    for sequence composition. The data are hosted on AnnotationHub and
    retrieved on first use; this package provides the accessors and the
    documentation.
Authors@R: c(
    person("Irem B.", "Gündüz", , "irembgunduz@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2641-0916")),
    person("Fabian", "Mueller", , "fabian.mueller@uni-saarland.de", role = "aut",
           comment = c(ORCID = "0000-0001-5809-2321")),
    person("ERA-NET Transcan-Neu III - EPILUNAR", role = "fnd",
           comment = "Grant 01KT2409"),
    person("Saarland University", role = "fnd",
           comment = "NanoBioMed Young Investigator Grant")
  )
License: Artistic-2.0
Encoding: UTF-8
Version: 0.99.12
Depends: R (>= 4.6.0)
Imports: AnnotationHub, GenomicRanges, stats
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
VignetteBuilder: knitr
biocViews: AnnotationData, AnnotationHub, FunctionalAnnotation,
        SequenceAnnotation, Homo_sapiens
BugReports: https://github.com/EpigenomeInformatics/methylTFRAnnotationHg38/issues
URL: https://github.com/EpigenomeInformatics/methylTFRAnnotationHg38
Roxygen: list(markdown = FALSE)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/methylTFRAnnotationHg38
git_branch: devel
git_last_commit: 5696758
git_last_commit_date: 2026-11-05
Repository: Bioconductor 3.24
Date/Publication: 2026-11-11
NeedsCompilation: no
Packaged: 2026-11-11 10:58:04 UTC; biocbuild
Author: Irem B. Gündüz [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2641-0916>),
  Fabian Mueller [aut] (ORCID: <https://orcid.org/0000-0001-5809-2321>),
  ERA-NET Transcan-Neu III - EPILUNAR [fnd] (Grant 01KT2409),
  Saarland University [fnd] (NanoBioMed Young Investigator Grant)
Maintainer: Irem B. Gündüz <irembgunduz@gmail.com>
