Package: TxDb.Osativa.MSU.RGAP7
Title: Transcript Annotation Database for Rice
Version: 0.99.10
Authors@R: 
    c(
      person("Dwijesh Chandra", "Mishra",
             role="aut",
             email="dwij.mishra@gmail.com",
             comment=c(ORCID="0000-0002-3327-6156")),
      person("Kabilan", "S",
             role=c("aut","cre"),
             email="kabilan151414@gmail.com",
             comment=c(ORCID="0009-0002-9422-0938")),
      person("ICAR-IARI",
             role="fnd",
             email="info@iari.res.in")
    )
Description: 
    Provides transcript, exon, and CDS annotations for Oryza sativa
    (rice) as a Bioconductor TxDb object, generated from the Rice
    Genome Annotation Project (RGAP) Release 7 / MSU7 GFF3 file
    (genome assembly IRGSP-1.0). The TxDb object is distributed
    through AnnotationHub and can be retrieved directly with the
    AnnotationHub package. Standard GenomicFeatures accessors such
    as genes(), transcripts(), exonsBy(), and cdsBy() can be used to
    obtain gene models keyed by MSU locus identifiers. The package
    also provides msu_to_rap() for translating MSU locus identifiers
    into RAP-DB identifiers.
Depends: R (>= 4.6.0)
Imports: GenomicFeatures
Suggests: AnnotationDbi, AnnotationHub, BiocManager, BiocStyle,
        Biostrings, GenomicRanges, GenomeInfoDb, knitr,
        riceidconverter, rmarkdown, testthat (>= 3.0.0), txdbmaker
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
URL: https://github.com/kabilanbio/TxDb.Osativa.MSU.RGAP7
BugReports: https://github.com/kabilanbio/TxDb.Osativa.MSU.RGAP7/issues
biocViews: AnnotationData, TxDb, Oryza_sativa, SequenceAnnotation,
        AnnotationHub
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/TxDb.Osativa.MSU.RGAP7
git_branch: devel
git_last_commit: ed5d97e
git_last_commit_date: 2026-11-06
Repository: Bioconductor 3.24
Date/Publication: 2026-11-11
NeedsCompilation: no
Packaged: 2026-11-11 10:59:59 UTC; biocbuild
Author: Dwijesh Chandra Mishra [aut] (ORCID:
    <https://orcid.org/0000-0002-3327-6156>),
  Kabilan S [aut, cre] (ORCID: <https://orcid.org/0009-0002-9422-0938>),
  ICAR-IARI [fnd]
Maintainer: Kabilan S <kabilan151414@gmail.com>
