470d500d0d0c679749b1b25b25b33998 *DESCRIPTION
11b54cf8d833b0f88e1c366495368b14 *NAMESPACE
5cfaabef0f52dd3fa12740d3824be472 *NEWS
2f27a2d1a2c72b8b878e3ccdb300f86c *R/RcppExports.R
daf4f19cee633302211d626a9a74bbf1 *R/add_multifreq.R
6aaa1c755e676cc1c50bb379bdc8d0f6 *R/compare_motifs.R
db4f51ec47cd06e3ae49f65b344c8d2a *R/compare_motifs2.R
5506a40c61eba7d0627a8b6fa9bd8c38 *R/convert_motifs.R
573e5c902885714ca31cf92436e2b980 *R/convert_type.R
3b80c62d3472795bb75f9ea52c62611f *R/create_motif.R
e98775a924366b100a1606e35ac14bc0 *R/create_sequences.R
cc0e8549b5e757198e582b5566aa27fb *R/data.R
1da60cb8364d3b5514de64892e3599bb *R/dedup_hits.R
29b8ad3c89dd135461c750d71d2cb509 *R/enrich_motifs.R
1bf1b1ce9cc49228dd864fc8df8ebc56 *R/enrich_motifs2.R
114d5d31d6437ce765a9611d3721abff *R/filter_motifs.R
997ef179d24426a2c9cf99ed45178b5a *R/get_bkg.R
dbdcecc12e5b9134d46a8ab99a85a413 *R/implant_motifs.R
dc828448035d6280814673a76ce4298c *R/make_DBscores.R
b7ded1d6bc816298c14027b875385544 *R/match_bkg.R
734c8b92a8ea6204bdd6afc22d422ef4 *R/merge_motifs.R
0aa4c5bef6c4c6867b475e7dc18a6804 *R/merge_motifs2.R
052e514c92a8f3485d3df36dd8188132 *R/merge_similar.R
e741382e0a89480026bac87b9015af28 *R/merge_similar2.R
3021830380b886e2f1ac33d35881befe *R/motif_coocc.R
3968bc700401df644ee5a6b8679bdff3 *R/motif_finder.R
1f984085209e21bb6699e0be6b0045a6 *R/motif_peaks.R
411b4db0365845b0089a03efb708b565 *R/motif_pvalue.R
92f55c7d0090a7152f0a037e3b22fffa *R/motif_rc.R
104879b15f19ad51f43d6971e995c7ef *R/motif_tree.R
e42d7b7084f33b9fdaf369053ff04cd3 *R/motif_tree2.R
073effe1ca360ee8ab65672d6d0818e7 *R/read_cisbp.R
f985d5ec02d1d4aa9720b904b2daa575 *R/read_homer.R
4e39825502eaae4ab1a0f21716179a0b *R/read_jaspar.R
cd66b6f74d15211f977be49f44b75ea5 *R/read_matrix.R
5b39c49392a8c80311925edc7ea3603a *R/read_meme.R
cf9ad61fbbd50ef3d75495bc22173f4c *R/read_motifs.R
4c0609a684ba5952baabbc9cb82f004e *R/read_transfac.R
351fccb5f76c22d3cf5d9302dea25909 *R/read_uniprobe.R
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2a8420f79444a54383a7a07d3a67efba *R/sample_sites.R
2ff0f38d8f929c52b52299b9048efd5b *R/scan_sequences.R
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239c185999a4ce5dc8f8c06dc816ea89 *R/sequence_complexity.R
c59b6485290c84aaa41fc4c2d01a416c *R/shuffle_motifs.R
4c56f70402cdb06d33a840416df2bb4c *R/shuffle_sequences.R
c2a48d26fbec274b3fefc24855e95584 *R/switch_alph.R
4cf67c9ccfbd3604b7dd378a7477fcc8 *R/trim_cwm.R
99925312d1cc55d4dae52034c4d30eef *R/trim_motifs.R
342e27f46f7685c8a126df4a496f142c *R/universalmotif-class.R
07b2599e0b59bcf5b836cb446a6a9e8e *R/universalmotif-methods.R
8038b76a5cdbd458c7f4ce1aa3142d21 *R/universalmotif.R
90c9fc622e2f8fdd520a528235b01cdb *R/universalmotif_df.R
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913bd9b22074b751393cd73454e4107c *R/write_matrix.R
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7dbbb519998452d360335e183003af09 *README.md
533839446f70bde34a1050627ce80586 *build/partial.rdb
f29f454ec32f296243efdae455f85c2c *build/vignette.rds
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5e29532dd526357344874a3bc9b82de0 *inst/figures/example1.png
4e60f3c14bb1d00b9eaca1667aed0f99 *inst/figures/example2.png
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8af39163233b8eb0eff650e083b9a3ce *man/enrich_motifs.Rd
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10fc9ae34850587c3653f504e6522adb *vignettes/MotifManipulation.Rmd
82befacac1d5bed0c9b2ab8e80f9d6ab *vignettes/SequenceSearches.Rmd
9d4b2c675eeeb84fb14ceb0a775aa34a *vignettes/universalmotif.bib
