# Generated by roxygen2: do not edit by hand

S3method(print,quantValidation)
export("calibrationData<-")
export("calibrationModels<-")
export(alignFeatures)
export(bindPanels)
export(blockCentre)
export(buildFeatureMeta)
export(calibrationData)
export(calibrationDiagnostics)
export(calibrationInfo)
export(calibrationLevels)
export(calibrationMetadata)
export(calibrationModels)
export(calibrationR2)
export(contributionHm)
export(generateTxtImages)
export(labelROIs)
export(quantPalettes)
export(quant_MSImagingExperiment)
export(quantileHm)
export(readMRM)
export(runExample)
export(runStudy)
export(selectTissuePixels)
export(stitchAcquisitions)
export(tissueData)
export(tissueInfo)
export(tissueMatrix)
export(trimMSI)
export(validateConfig)
exportClasses(quant_MSImagingExperiment)
exportMethods("calibrationData<-")
exportMethods("calibrationModels<-")
exportMethods(applySNR)
exportMethods(back2NA)
exportMethods(calibrationData)
exportMethods(calibrationDiagnostics)
exportMethods(calibrationLevels)
exportMethods(calibrationMetadata)
exportMethods(calibrationModels)
exportMethods(calibrationR2)
exportMethods(combineMSIs)
exportMethods(createCalCurve)
exportMethods(createMSIDataMatrix)
exportMethods(imageR)
exportMethods(int2SNR)
exportMethods(int2conc)
exportMethods(int2response)
exportMethods(plotCalCoverage)
exportMethods(removeBlankMzs)
exportMethods(show)
exportMethods(summariseCalLevels)
exportMethods(tissueData)
exportMethods(tissueMatrix)
exportMethods(zero2NA)
import(Cardinal)
importFrom(ProtGenerics,
  "spectraData<-",
  spectraData
)
importFrom(chemCal,inverse.predict)
importFrom(circlize,colorRamp2)
importFrom(dplyr,
  across,
  all_of,
  any_of,
  arrange,
  bind_rows,
  distinct,
  filter,
  group_by,
  left_join,
  mutate,
  pull,
  right_join,
  row_number,
  select,
  summarise,
  ungroup
)
importFrom(ggplot2,
  aes,
  coord_cartesian,
  coord_equal,
  discrete_scale,
  element_blank,
  element_line,
  element_rect,
  element_text,
  facet_grid,
  facet_wrap,
  geom_histogram,
  geom_line,
  geom_point,
  geom_raster,
  geom_tile,
  geom_vline,
  ggplot,
  labs,
  rel,
  scale_alpha_identity,
  scale_fill_gradientn,
  scale_fill_manual,
  theme,
  theme_minimal
)
importFrom(grDevices,
  colorRampPalette,
  dev.new,
  rainbow
)
importFrom(grid,unit)
importFrom(methods,
  as,
  is,
  new,
  setValidity,
  show,
  validObject
)
importFrom(patchwork,wrap_plots)
importFrom(stats,
  median,
  na.omit,
  quantile,
  sd,
  setNames
)
importFrom(tibble,
  column_to_rownames,
  rownames_to_column,
  tibble
)
importFrom(tidyr,pivot_wider)
importFrom(utils,
  read.csv,
  read.table,
  write.csv,
  write.table
)
importFrom(viridis,scale_fill_viridis)
importFrom(yaml,read_yaml)
