e51e2422ce1f5275da77f4068bb3c965 *DESCRIPTION
6617c6ea335652f87dd3767e672a7137 *NAMESPACE
1c186be23decf185e095ce042a9877be *NEWS
807b802b425215488ce1f3ca65daee16 *R/IRSnorm.R
8ebd7035a7036c4cf9c5ad06d96c05d3 *R/assignColours.R
cfb9fce86f39d3760f7d3c55aed035f7 *R/checkArguments.R
abf3de886f8af5d47258a9a35a3b34df *R/coefVar.R
b5152a6dc3718c54d1d05094f0505542 *R/computeDiffStats.R
0e47bd7bf589f939ef408389910948af *R/convertToMSnset.R
5174bdd6b8608a8f7f43585c06e37d98 *R/corrPlot.R
a79537dc4ee7f5c8f88fd6585557211a *R/coveragePlot.R
97eddb46f262a2ccff2497e831b97d0c *R/getContrastResults.R
c058406fd47bec72bf36e35cd10092e4 *R/groupScaling.R
15f1365998bb3a606072d92e167a6e5f *R/hierarchicalPlot.R
09259520cbb5c97e19f818ec6a88e44e *R/intensityBoxplot.R
14ed9bed562578e7a7f1fed92782bcb3 *R/intensityPlot.R
6797b61655d737fa58e513d0580ef564 *R/maVolPlot.R
688bb5123dcdb50303484b5420a93282 *R/mergePeptides.R
733f60dd381af9a2c6c0f912c9057f1f *R/mergeSites.R
480e71902fae37b07a1b0edcaa882b03 *R/normalizeQuantiles.R
3b60e1d2890b1c0b5da102c9ad4af201 *R/normalizeScaling.R
274f4c834a848f11a6ecb93f5be7fbde *R/pcaPlot.R
b6e405ecb18af94df946c9f180c05db9 *R/peptideIntensityPlot.R
634b1f7b7c77c392bd9b9b1f3075bfdf *R/plotMeanVar.R
f1809b9df4a34db6b69e992ef19a1a17 *R/qPLEXanalyzer-package.R
2d8bd2f35168652f59b411a19c2672f3 *R/regressIntensity.R
4b6bd9b89a3a6873ea66d0dd4b259840 *R/rliPlot.R
90dc87585ef16fa6002d342d2dcf5e27 *R/rowScaling.R
19fe553945eef817f689e4f665d4a5ec *R/summarizeIntensities.R
b43881737afc4333747563896e4ddb28 *build/vignette.rds
9b3c2923419145aed6661fa22d673bf6 *data/ER_ARID1A_KO_MCF7.RData
e30fe11a6a8c3fd4c0f9592eea013b14 *data/datalist
adb57a409813466221a4538a879d99d0 *data/exp2_Xlink.RData
39910e8f266a8ef553d73fc7d1eeb201 *data/exp3_OHT_ESR1.RData
2fb42f5af8be4a26aac201c5db0ee3b1 *data/human_anno.RData
0a8643c0573662c7cb9d9561a477f63e *data/mouse_anno.RData
0156053374c4cb3f7580a6b7f27a933f *inst/CITATION
353be8fe15974a2fbea76b0aea8cd218 *inst/doc/qPLEXanalyzer.R
097f4df285e0100b64466d399d6a2309 *inst/doc/qPLEXanalyzer.Rmd
644b9569c47d66ac6265028e5545e61a *inst/doc/qPLEXanalyzer.html
ee84308a96b2643008b271da96c92125 *inst/extdata/P03372.fasta
9fc811122a1fa46c00c993704eb189ed *man/ER_ARID1A_KO_MCF7.Rd
a9f55877dd66a9d57811283a830bb2e3 *man/IRSnorm.Rd
a1a6a8f4f84a7f1a069fd48243646cc7 *man/assignColours.Rd
be371d5c31f39be4ee80cc1fc4be4c46 *man/coefVar.Rd
fbf312999940b247879d866c9cd8b095 *man/computeDiffStats.Rd
c2f2d76ce75ae2041d1f10626ca21e4e *man/convertToMSnset.Rd
50f77ddbd98588d8626cb221a4184f34 *man/corrPlot.Rd
049bf1e294dfec92a29c8867dce04ca6 *man/coveragePlot.Rd
b2263941ca6013819e578f73173e9a8e *man/exp2_Xlink.Rd
ac4a11f57acd1f15656dc3e03942860a *man/exp3_OHT_ESR1.Rd
89b3b661d4b7a151450572a54f67ae89 *man/getContrastResults.Rd
87866642856984cd8f2ad51011164af2 *man/groupScaling.Rd
60dde2ddeb2181bef7d59ee3cbae3cf3 *man/hierarchicalPlot.Rd
dd6f36cbcf062544cea8ebe2283c192c *man/human_anno.Rd
8d8f12a08acba24eddbe221b268c22fc *man/intensityBoxplot.Rd
f040c3ab2726f110e1171226d8b91557 *man/intensityPlot.Rd
98c5b171210eef72d043eec4626e88d1 *man/maVolPlot.Rd
99f9ad67056a49d5b2c03c469097fc67 *man/mergePeptides.Rd
ee28e41c63c8ca94850db00a29c3ace0 *man/mergeSites.Rd
e5a0d00815c79b8985d1f754143f7510 *man/mouse_anno.Rd
f59c463cf189a8fbe9bd1fcacf2527cc *man/normalizeQuantiles.Rd
fe3ad38f80c15447a29e173a7a0d8cd3 *man/normalizeScaling.Rd
eee084c010a63d9349fabb57485bb510 *man/pcaPlot.Rd
2ef441c6a3fb640c01766c9488f6c78a *man/peptideIntensityPlot.Rd
5ba34113e4590b41000dbc0e44cdbd96 *man/plotMeanVar.Rd
ae9728dc193003ca437e6544fa702179 *man/qPLEXanalyzer-package.Rd
748d8e124f26636700b5045ba3a3ec24 *man/regressIntensity.Rd
367a405311c2e0bce744c915bd6b5450 *man/rliPlot.Rd
b4598f1b04cbed9ff9a9a64e01d73ff6 *man/rowScaling.Rd
2028c68bfc37035839708d743d0a1479 *man/summarizeIntensities.Rd
2dbda98b9e4cb90f81c611fa12ce8af3 *vignettes/library.bib
097f4df285e0100b64466d399d6a2309 *vignettes/qPLEXanalyzer.Rmd
