6a25e0a8fbf4e7c5a46d109634b6771f *DESCRIPTION
47414893baafb71747483a8186f9100d *NAMESPACE
325b4bf24a29afa8a1421d1c5f2e0b9b *NEWS
f0b45c9a7cb7ae56ee33857873ecb9bf *R/AllClasses.R
197c1429a33fbdbff06203e707801332 *R/AllGenerics.R
5fbc2bc114589d4efed84ac7996f1338 *R/consensusIa.R
dd3cc865eb703958adfa28cdc70889c4 *R/createIa.R
33d1e79426cc6fe5b7ccb64bdcead1f1 *R/differentialAnalysis.R
0489e5c676b1a3d3a1e5253223b18b17 *R/fourSynergy.R
bd4ff93c77c12d2e45b3b6cfcb73072f *R/globals.R
1b6ac9599a57a9b56a67a64151de2998 *R/karyoplots.R
87a1d3ef9b0c587e27792652b213bd34 *R/plotBaseTracks.R
3b7584b0b362db36e6abfe29a82555f3 *R/plotConsensusIa.R
e3c0cc1420b4dc7bc3453f2bd624d6fd *R/plotConsensusTracks.R
4217fd664c31ad6914183045370c96fe *R/plotDifferentialIa.R
8890474b7f4de395870f6ab5aa858b92 *R/plotIaIndividualTools.R
a04221c82b5fb57ba253d2afeedd2590 *R/utils.R
1fb27a421987fc7172749f6f280e4ca5 *README.md
5dee5360dc944b9ed20a870f45759108 *build/vignette.rds
b25765db206377240fec60375e1edaef *inst/doc/fourSynergy_vignette.R
e776605faaae05ac2fef6fc7dc0f8971 *inst/doc/fourSynergy_vignette.Rmd
e420632eda4d9c066f6ee1a521b6706d *inst/doc/fourSynergy_vignette.html
460a7758592ed7aef690d84fb91ae6eb *inst/extdata/Datasets/Demo/info.yaml
c37c9e7f63116c180b9a7d412a378e58 *inst/extdata/results/Demo/alignment/TGFb_1_sorted.bam
9f6596f26e0d8bc5b4a5165b1e42cad1 *inst/extdata/results/Demo/alignment/TGFb_1_sorted.bam.bai
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a5c46889e7dfcbc3f3572defa63c3fd3 *inst/extdata/results/Demo/alignment/TGFb_2_sorted.bam
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2f5c9621a86926d4f35e52ebb0aeaf04 *inst/extdata/results/Demo/alignment/TGFb_2_sorted.bedGraph
1f754f4f78f11cc0b05d0b54cb7178da *inst/extdata/results/Demo/alignment/shc_1_sorted.bam
1ac9a612d357a7e7c998aedea0d861fa *inst/extdata/results/Demo/alignment/shc_1_sorted.bam.bai
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cf2b587c410bec0025e5c35192695f74 *inst/extdata/results/Demo/alignment/shc_2_sorted.bam
0537efa8b2366ce9f4ef041f81a40fdc *inst/extdata/results/Demo/alignment/shc_2_sorted.bam.bai
e3a2664b8847e4d00b680ed9edaaa47b *inst/extdata/results/Demo/alignment/shc_2_sorted.bedGraph
274b7be87f08a12529394b15836d53f5 *inst/extdata/results/Demo/nearbait_area.bed
fef18e1c4e3a3c962fbba4e563b27e7d *inst/extdata/results/Demo/sia/Demo_foursig_11_condition_nearbait.bed
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3e645bc922d659bee1476efae451c9de *inst/extdata/results/Demo/sia/Demo_foursig_1_control_nearbait.bed
47489f7b0524da504e17b3835500c63c *inst/extdata/results/Demo/sia/Demo_foursig_3_condition_nearbait.bed
503e32bf28781ea933ad574ba9ffb056 *inst/extdata/results/Demo/sia/Demo_foursig_3_control_nearbait.bed
256fd4626358b67cce943b6f10f3271a *inst/extdata/results/Demo/sia/Demo_foursig_5_condition_nearbait.bed
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68434077ff605387efbc1c077956ac33 *inst/extdata/results/Demo/sia/Demo_peakcSig_101_condition_nearbait.bed
417c35ea6a59dbdfba818bacddcb3657 *inst/extdata/results/Demo/sia/Demo_peakcSig_101_control_nearbait.bed
47871c5e81c1db912c3b759d41f7a31b *inst/extdata/results/Demo/sia/Demo_peakcSig_11_condition_nearbait.bed
9993013234c684847646d3865a9d41d1 *inst/extdata/results/Demo/sia/Demo_peakcSig_11_control_nearbait.bed
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9f1161c8a6422ab847a10af6db2845a6 *inst/extdata/results/Demo/sia/Demo_peakcSig_1_control_nearbait.bed
9f1161c8a6422ab847a10af6db2845a6 *inst/extdata/results/Demo/sia/Demo_peakcSig_21_condition_nearbait.bed
7c70bd7769bbbb7b4999eb17a4a940ff *inst/extdata/results/Demo/sia/Demo_peakcSig_21_control_nearbait.bed
9f1161c8a6422ab847a10af6db2845a6 *inst/extdata/results/Demo/sia/Demo_peakcSig_31_condition_nearbait.bed
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9f1161c8a6422ab847a10af6db2845a6 *inst/extdata/results/Demo/sia/Demo_peakcSig_51_condition_nearbait.bed
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5530b33faf9430338572fe0529af038e *inst/extdata/results/Demo/sia/Demo_r3c_10000_condition_nearbait.bed
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e35d5c4922472f793b70057a6c0a0acb *inst/extdata/results/Demo/sia/Demo_r3c_5000_condition_nearbait.bed
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2f542ab977608206cde4d57b4fd37a77 *inst/extdata/results/Demo/sia/Demo_r4cker_cis_condition_nearbait.bed
8b97c11daba65aa330c5682c97ddfe8e *inst/extdata/results/Demo/sia/Demo_r4cker_cis_control_nearbait.bed
f5b2b7d45f2b587bfc16cc3b963f4af9 *inst/extdata/results/Demo/sia/Demo_r4cker_nearbait_condition_nearbait.bed
d1ee54cd6ede2e8c1c6356348195dd03 *inst/extdata/results/Demo/sia/Demo_r4cker_nearbait_control_nearbait.bed
1c5f6b3a23b39b3fc5c5ebad586b9b3c *inst/extdata/weighting_auprc.csv
bde9cdd9ee86bb86f8834746fb1af024 *inst/extdata/weighting_f1.csv
1fb47d36b45a4ce5705314c19074f7d4 *inst/scripts/data.R
3b79bc921f44865d93ef87094a5428d8 *man/checkConfig.Rd
bcd735e33cd41141496c172cbaad0857 *man/consensusIa.Rd
ba54abc47b032a61c8d176027f13e553 *man/createIa.Rd
d5c6fef4094ed4caf5acd79c17ac44ed *man/createKaryoplot.Rd
3714803803701211c6cbb9498516dc58 *man/differentialAnalysis.Rd
e82e1f66fc4201cf835362c1cf8ae077 *man/fourSynergy-accessors.Rd
e907bb8af17af7148a04339fc14a2c9b *man/fourSynergy-class.Rd
97bd8c04b1f8e7885698f3123954ed69 *man/fourSynergy-package.Rd
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0f6085e48431a9238f77b76bf88aa025 *man/plotBaseTracks.Rd
5be1e9018dd0332cc63f8415094f8ae1 *man/plotConsensusIa.Rd
b1058ec731af02819c9ce5d47d9ef25f *man/plotConsensusTracks.Rd
bcdb89b874852413b85258256748908a *man/plotDiffIa.Rd
9cf9c0c422a7f0412a35e2d72ff33f0d *man/plotIaIndiviualTools.Rd
7e34c2c775a77053b18bfd42791f6577 *man/plotRegions.Rd
80fdc28e209da06bf518d5dcf6c83d30 *man/plotTracks.Rd
f9063fd5e255cf3951f0c27cc7522a32 *man/plotpreTracks.Rd
27f8809b261787712f6b47fd32f48d96 *man/readAndTag.Rd
a92432e6301f5d69dae6beef9aa5f7e8 *man/readBedGraph.Rd
cf672cc9260640edafd750c577c6aeba *tests/testthat.R
10066bd5c0bf8715960d06539a508986 *tests/testthat/test-testing.R
e776605faaae05ac2fef6fc7dc0f8971 *vignettes/fourSynergy_vignette.Rmd
e35319e877e13d83f8a486b20e77b643 *vignettes/references.bib
