d067214155336a595e41563a7ec55aa4 *DESCRIPTION
9ba90ac4ae6719b8709da04942463d16 *LICENSE
17b7a9cef8bbf23763b8307629c68030 *NAMESPACE
1f97781fb669395031109e257cab9420 *NEWS.md
37f6bb8159543c42f4547470334ec664 *R/AINet.R
8e8120e684f611d6a1e22f763b3774e7 *R/ActivationGate.R
df4ff387f2d256a784b5df335222a376 *R/ClassSwitcher.R
c62af03e5067f45ce7d7814a83343f12 *R/ConvergentSelector.R
0e013d2924013cffb48f06b6e236c81a *R/GerminalCenter.R
d31b4ed61c5a9243566e59ed595aa7e8 *R/IdiotypicNetwork.R
8c76f0d0e8f8fbaa264c8c8dcceb4ffe *R/ImmuneAlgorithm.R
b89f3b39c2fef994cc261123f92aceb3 *R/ImmuneRepertoire.R
e86c5dc7d0dfb8c742aa627c80d3cab5 *R/MemoryPool.R
c375d02b3215826a9aa96d6833398eb2 *R/Microenvironment.R
22bb019ddac2de713b994c7a539d611c *R/RcppExports.R
c4fff39638284a721e559dbabc2e1743 *R/SHMEngine.R
a5a233a922a2fdb476c69608c7ddb489 *R/VDJLibrary.R
7e0ecb05e8852ea108413e89f087bf1c *R/bHIVE-package.R
c1af15b227636cabbb247fcfcb747c4b *R/bHIVEParam.R
22bb404ce9006915177a4fce6e6b0107 *R/bHiVE.R
5448cf299a142fa3dfe9cacd31422548 *R/bHiVEModel.R
74783f76f339836745d44fbe238edb75 *R/honeycombHIVE.R
cc7fc11b917e03c482752bc1ae453e56 *R/honeycombHiVEmodel.R
5efc4da637a4565eb66161919fef83c5 *R/refineB.R
d368d0b90b8c03120417cfbe440dfde8 *R/swarmbHIVE.R
93741f3a4d659eefc16bb3c62d29b4f9 *R/utils.R
b0a4eb7b4bd1ca1c740b709b7fcee657 *R/visualizeHIVE.R
1420918485e032df4df2966d4ff21194 *README.md
ad8886f65ff26d840040c7b69aa46820 *build/vignette.rds
06d497593a77b9fbb068e7062d9ba1bb *inst/WORDLIST
b75f20aa2bfccd46da951847bfe417c7 *inst/doc/bHIVE.R
15acbcb224c20d35c588e5f0df8f5034 *inst/doc/bHIVE.Rmd
311e0ac44dce349cc4bdf135e9da2344 *inst/doc/bHIVE.html
c4f8a0367e2dd7961eb35066ca9d62c5 *inst/doc/immune-modules.R
3e61f0892e5c8f5cdaf55ed220c10820 *inst/doc/immune-modules.Rmd
c46f77e4604ae9835cc6c2319e22aa4d *inst/doc/immune-modules.html
9d84135c7239bebe624aa80b03375d4f *man/AINet.Rd
c79d5bcd486293e6c9b28ba9e85072c9 *man/ActivationGate.Rd
55e5bce501a4e2db0c99300695a74c5a *man/ClassSwitcher.Rd
eceba105517034f2e84420475fd59bc8 *man/ConvergentSelector.Rd
2164e9d4dd85c630c21038d75e8314c0 *man/GerminalCenter.Rd
6272b663ebfbe255ab6f71da37699ef4 *man/IdiotypicNetwork.Rd
95f14721e59209a8ed809fd1653c09f8 *man/ImmuneAlgorithm.Rd
46d258c1f37ebeba2f50fc6b5ca89f6c *man/ImmuneRepertoire.Rd
fc240dee49463d3e03a3149b8bd8033c *man/MemoryPool.Rd
c34547947423bddb80b3ef7bfd373c4d *man/Microenvironment.Rd
efa8778dfcd25d1377ffa72f3d38c10d *man/SHMEngine.Rd
125062d98ab7c5df436ae90c35e63ad5 *man/VDJLibrary.Rd
dd4052d7a08950024fbff28c941057e6 *man/bHIVE-package.Rd
f752c5b3659ebcb30cb2412b059ea976 *man/bHIVE.Rd
92822164673da8dc174cc845995c9d00 *man/bHIVEParam.Rd
28ab37ad16b7cef8019f9a0fd832808d *man/bHIVEmodel.Rd
a19dd5e694c6d7b69255175cb17686e7 *man/figures/logo.png
b69d68df2e2df35dbea8f9e90c46c3d6 *man/honeycombHIVE.Rd
c4adadce7607d23fc0efe1ebda0e6e2f *man/honeycombHIVEmodel.Rd
4af13986e92f86dc983fa45da68fbd50 *man/null-coalesce.Rd
53a7d918c4008534a5d7bc2a097cbc42 *man/refineB.Rd
d1e82565f1912041ba9f767a6c143023 *man/swarmbHIVE.Rd
846549b2fd1600af35a3bf48fa67f4bd *man/visualizeHIVE.Rd
d80543633f2d4563ff1d3124278e5b4e *src/Makevars
d80543633f2d4563ff1d3124278e5b4e *src/Makevars.win
a9ddd1582e5cdd2c2e6df9112587fe07 *src/RcppExports.cpp
371e15e260599e4e328089a06f236dee *src/affinity_distance.cpp
e2fcb529876e6073ea9af17bfcc55917 *src/affinity_distance.h
053c3987239415df7809ffd86ac63c20 *src/bHIVE_types.h
45151650dacb72512851bcc3e49f4a5a *src/clonal_selection.cpp
2a223eb6741f9cb975dd23e784661ac2 *src/idiotypic.cpp
271e4e74dd721ba2c1c075b0935edd6e *src/network_suppression.cpp
574f80388466065009da325d182509da *src/shm.cpp
c0614c4ea55c6beffcb5b63c616c7510 *src/shm.h
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
8229081f5a4c6a0998be1b8bb4ca6b3b *tests/testthat.R
30d138db8dcaeba93871dfaa8640beaf *tests/testthat/fixtures/ainet-golden.rds
a419755e3f51da783207f618ebb519ce *tests/testthat/fixtures/make-ainet-golden.R
d8e98a9684bd3a1b06c8483c7a296963 *tests/testthat/helper-golden.R
fe2a95e95b28a168d087988059824fd7 *tests/testthat/test-AINet-golden.R
8731f190bc59d1bdecdeaf3c682b50ec *tests/testthat/test-AINet.R
8ce2cd7ce51abaf16eb1966f86ceaef3 *tests/testthat/test-ActivationGate.R
4c421a8b62ac9e83d605c5ebf8ebe4d7 *tests/testthat/test-ClassSwitcher.R
ab9ddfd74ae6b4426e5f1ac85c7ae24e *tests/testthat/test-ConvergentSelector.R
b029b63889163024000af6d30cf2280d *tests/testthat/test-GerminalCenter.R
5008fec6be1d6bfb6cbd66e38a1f698d *tests/testthat/test-IdiotypicNetwork.R
9ebad4cb507910e8bb6625b46bb4e637 *tests/testthat/test-ImmuneAlgorithm.R
9ecb45a002c6657d084c27e357bca56d *tests/testthat/test-ImmuneRepertoire.R
5109f07b0452223ef4bb9ff8a5165c50 *tests/testthat/test-MemoryPool.R
60f411048389f444e70668e5569e7666 *tests/testthat/test-Microenvironment.R
8c5b575cbb64805a56fd74d97883320b *tests/testthat/test-Rcpp.R
ee7baa7753369926772bdbb86deab0d6 *tests/testthat/test-SHMEngine.R
815ebf00598216952dc3dd4ae2784c2c *tests/testthat/test-VDJLibrary.R
caa3a75666874d9eb849c035c0aee5eb *tests/testthat/test-bHIVE-SE.R
6d647f1d77ee1a349b7006dfd05df575 *tests/testthat/test-bHIVE.R
af22a0aa32e61eb4ad928f3f8452c635 *tests/testthat/test-bHIVEModel.R
1a81f94b28160d3393ae283b3916009c *tests/testthat/test-bHIVEParam.R
123cda6cbfbeef8761b0099c62020871 *tests/testthat/test-honeycombHIVE.R
dd80d036a8c573bcec12fcab39075a0f *tests/testthat/test-refineB.R
0d34714324e13856f6ef94ff962f0367 *tests/testthat/test-swarmbHIVE.R
3a891fc9655c440758f226ec2dec78fb *tests/testthat/test-utils.R
57a0e0f2506edde94d823e1543aa8248 *tests/testthat/test-visualizeHIVE.R
15acbcb224c20d35c588e5f0df8f5034 *vignettes/bHIVE.Rmd
3e61f0892e5c8f5cdaf55ed220c10820 *vignettes/immune-modules.Rmd
