617368a0f9ea14de6e37f7fa4136e2de *DESCRIPTION
d030849d13c71e2e5e870deeea32194f *NAMESPACE
3ec552be285c68e5cc19d575d27b9bf6 *NEWS.md
d023b009fe7158eaeb344fb85d3e88d0 *R/ConnectedComponent-class.R
11a21b9ea42666199ffb88d3755dd72f *R/PSM-class.R
dc6e526393dd2126a970f82755404713 *R/PSM-filter.R
0ef98a5af7f71ec10d9c0cf7f622342a *R/PSM-read.R
6808ef4318193f6cb603a4c0d17bea54 *R/PSM-reduce.R
e57b9303b77d152ddb63a62718d0c6a4 *R/PSM-validate.R
7c631bcd9cfc4a9744e05cb18a379be1 *R/PSMatch-package.R
54bb3a2b074d491d426210a97ac3324d *R/adjacencyMatrix-accessors.R
7c511ebd4738eedd95cfa5cb136e15d5 *R/adjacencyMatrix-create.R
7901f4b661657e33d2fcbf1ba66423a2 *R/adjacencyMatrix-plot.R
afdcfd67c933278244025ff622191ff1 *R/data.R
ddc93a1a2b2556f0eb49c226a14691d7 *R/describe.R
c2638c17e92895004e7817d68c8136a8 *R/fragments-calculate.R
282b87b9c3bc2132d074ade32fa0259f *R/fragments-label.R
7f1ea01f15a0cef623288b088b0e03be *R/fragments-utils.R
6ac6fe089de746aa4884d91298bdbfcd *R/functions-mzR.R
174856f99417c639d7e1a217cb6dc235 *R/plotSpectra-PTM.R
24b8d8755563a990454903ae0125b70e *README.md
13741092b4740d0a21a1a2644cc95355 *build/vignette.rds
d9b50bbc2362850a326b302daba3a810 *data/datalist
142a0b65c9663b97781d2ba2f42cc406 *data/psmBoekweg.rda
1501bd5a369599e2924b831dc1bab45a *data/spBoekweg.rda
f63bb22ceee78313836f67f9e19f4c67 *inst/CITATION
f601cc3c4649178e924afc670f5862b4 *inst/doc/AdjacencyMatrix.R
1301a76da3896617e812113e02991f21 *inst/doc/AdjacencyMatrix.Rmd
d5b198b7cedc92e110c1d85efeaa517f *inst/doc/AdjacencyMatrix.html
0bb06f5efb3aca8206634b25bed95545 *inst/doc/Fragments.R
c4b4f5255e97632ca8e1cf56b3506809 *inst/doc/Fragments.Rmd
897ccf5da3cf6029e71682ec1a810f75 *inst/doc/Fragments.html
2a25614c5c3332c6954f5708495bf2c5 *inst/doc/PSM.R
3d936e2be8261575f4b0e087cdf3bf9e *inst/doc/PSM.Rmd
cab01afa859a7ef903ff6d1deca315de *inst/doc/PSM.html
85a229558da1500aba7a5de72430bde8 *inst/doc/validatePSM.R
5c9bd701744074ff523c1df08579fcf6 *inst/doc/validatePSM.Rmd
2b712bc253242c49768f1ae53de3ed11 *inst/doc/validatePSM.html
a63b9cafc7957249b7692302c2037077 *inst/scripts/make_BoekwegData.R
2337613abdfa3e56436b392245f62b1e *man/ConnectedComponents.Rd
96a123973b80fd638f977b9cc97e5166 *man/PSM.Rd
80ffd89a1e22a043af79c920cd2c437b *man/PSMatch.Rd
353b60dc19038b29f83a812f2f09adf1 *man/adjacencyMatrix.Rd
39491abdf3771833e6d9400c1f154b62 *man/calculateFragments.Rd
1254317c08b27fc7dc3220947dc62ff8 *man/describeProteins.Rd
f14246b61f53a9fe693e18f4445d6c9f *man/figures/logo.png
7701612c656c0c9faf44ec42721f0ab0 *man/filterPSMs.Rd
6499d980e72e3632a988cfd39523d2e8 *man/getAminoAcids.Rd
4b884c1b52837bb49c5bb516dbadaa06 *man/getAtomicMass.Rd
3a1fbeaf1b4b80e352d2a63f62a91f9f *man/labelFragments.Rd
ff8521e6bdbbd2fd0709b06b1913105b *man/plotSpectraPTM.Rd
2205ed6ff0792bcfc2acc48b5e92f420 *man/psmBoekweg.Rd
42dfb109213c4b7a291b23435fc6ff67 *man/spBoekweg.Rd
163273e279f19de73d92859e3dfc21dd *man/validatePSM.Rd
f56ae13782256ac316f67dc95c542980 *tests/testthat.R
87eb3284a2c7e485c33cd11758548633 *tests/testthat/_snaps/plotSpectraPTM/deltamz-false.svg
981e1ecdb3bdadeebe3c034453cfb7cb *tests/testthat/_snaps/plotSpectraPTM/deltamz-true.svg
037fa0e36ae8a855eb4f614340c7d641 *tests/testthat/_snaps/plotSpectraPTM/diff-col.svg
52f0b523106cfc2379c160544f8fe35c *tests/testthat/_snaps/plotSpectraPTM/usi-true.svg
0d635464668023729a1996e034d02cb1 *tests/testthat/test_ConnectedComponents.R
4410cd695e644f7d76007dd3c0d585c8 *tests/testthat/test_PSM.R
eff19d8fd550eeae725aa24132e1258c *tests/testthat/test_adjacencyMatrix.R
223d43914db0862299da595115b68583 *tests/testthat/test_describe.R
5d84fc4574553e0ee3e8d72f01b29567 *tests/testthat/test_fragments.R
7ec998ff60a8bb0f153f2e066a70d31b *tests/testthat/test_labelFragments.R
e8d0a6bed789678b4cd0bcd8afa0262d *tests/testthat/test_plotSpectraPTM.R
cb766138f2c59d1239d00875f575551d *tests/testthat/test_validatePSM.R
1301a76da3896617e812113e02991f21 *vignettes/AdjacencyMatrix.Rmd
c4b4f5255e97632ca8e1cf56b3506809 *vignettes/Fragments.Rmd
3d936e2be8261575f4b0e087cdf3bf9e *vignettes/PSM.Rmd
5c9bd701744074ff523c1df08579fcf6 *vignettes/validatePSM.Rmd
