% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils_documentation.R
\name{.sharedParametersAmongConverters}
\alias{.sharedParametersAmongConverters}
\title{A dummy function to store shared documentation items for converters.}
\usage{
.sharedParametersAmongConverters()
}
\arguments{
\item{removeFewMeasurements}{TRUE (default) will remove the features that have 1 or 2 measurements across runs.}

\item{useUniquePeptide}{TRUE (default) removes peptides that are assigned for more than one proteins.
We assume to use unique peptide for each protein.}

\item{summaryforMultipleRows}{max or sum - when multiple PSMs identify
the same feature within a single MS run (duplicate PSMs), use the
highest (max) or sum of the duplicate intensities. Default is max for
label-free converters and sum for TMT converters. Note that this parameter
does NOT control collapsing across fractions of the same biological mixture.}

\item{removeProtein_with1Feature}{TRUE will remove the proteins which have only 1 feature, which is the combination of peptide, precursor charge, fragment and charge. FALSE is default.}

\item{removeProtein_with1Peptide}{TRUE will remove the proteins which have only 1 peptide and charge. FALSE is default.}

\item{removeOxidationMpeptides}{TRUE will remove the peptides including 'oxidation (M)' in modification. FALSE is default.}

\item{removeMpeptides}{TRUE will remove the peptides including 'M' sequence. FALSE is default.}

\item{use_log_file}{logical. If TRUE, information about data processing
will be saved to a file.}

\item{append}{logical. If TRUE, information about data processing will be added
to an existing log file.}

\item{verbose}{logical. If TRUE, information about data processing will be printed
to the console.}

\item{log_file_path}{character. Path to a file to which information about
data processing will be saved.
If not provided, such a file will be created automatically.
If \code{append = TRUE}, has to be a valid path to a file.}

\item{...}{additional parameters to \code{data.table::fread}.}
}
\description{
A dummy function to store shared documentation items for converters.
}
\keyword{internal}
