Package: MGnifyR
Type: Package
Version: 1.99.0
Authors@R: c(
    person(
        given = "Tuomas", family = "Borman",
        role = c("aut", "cre"),
        email = "tuomas.v.borman@utu.fi",
        comment = c(ORCID = "0000-0002-8563-8884")),
    person(
        given = "Ben", family = "Allen",
        role = c("aut"),
        email = "ben.allen@ncl.ac.uk"),
    person(
        given = "Leo", family = "Lahti",
        role = c("aut"),
        email = "leo.lahti@iki.fi",
        comment = c(ORCID = "0000-0001-5537-637X"))
    )
Title: R interface to EBI MGnify metagenomics resource
Description: 
    MGnifyR is an R interface to MGnify, EBI's resource for the analysis of
    metagenomic, metatranscriptomic and amplicon data. It searches MGnify
    studies, samples and analyses with MGnify API v2, and fetches their
    taxonomic and functional profiles together with sample metadata. The data
    is returned as TreeSummarizedExperiment or MultiAssayExperiment, so that
    it can be analysed directly with Bioconductor microbiome tools.
biocViews: Infrastructure, DataImport, Metagenomics, Microbiome
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.6.0), TreeSummarizedExperiment
Imports: curl, jsonlite, Matrix, MultiAssayExperiment, S4Vectors,
        stats, tools, utils
Suggests: knitr, quarto, testthat
URL: https://github.com/EBI-Metagenomics/MGnifyR
BugReports: https://github.com/EBI-Metagenomics/MGnifyR/issues
VignetteBuilder: quarto
SystemRequirements: Quarto command-line tools
        (https://github.com/quarto-dev/quarto-cli)
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/MGnifyR
git_branch: devel
git_last_commit: a327a1f
git_last_commit_date: 2026-11-07
Repository: Bioconductor 3.24
Date/Publication: 2026-11-08
NeedsCompilation: no
Packaged: 2026-11-09 00:19:05 UTC; biocbuild
Author: Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Ben Allen [aut],
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
