d22681583acfa57ff0bc0fbd277a9416 *DESCRIPTION
537847711a03f10e12290a0237042348 *NAMESPACE
07938c79141fd1a5ccc5369417386249 *NEWS
e8b87fc5112f67a5db182e8c02988310 *R/AllClasses.R
8ddca91e8409296aa0b53e9054a110fa *R/AllGenerics.R
a6af073176b0314cb1607736daacd24e *R/RcppExports.R
8270a11034031c820a55446250a002f7 *R/data.R
08ef9fe650c5819c0e4ab1473aa2deea *R/detectCompartments.R
dc55d0de84fee3ddfc9e9b687f5fbbb1 *R/filterSmallChromosomes.R
8826ae52403f7bdae573666b53ed0366 *R/filterSparseReplicates.R
fa5a0afac709aaeab38b282e4c410ac6 *R/filterWeakPositions.R
83b843e82d8fd2375b5100827f022313 *R/internalApply.R
826359429775d116535d1f883ba30392 *R/internalConstructorHelpers.R
014c230f3044b537a261ca9c472c1cf9 *R/internalConverters.R
ed0d5b793da9227b4946f00c896bb514 *R/internalPlotHelpers.R
d5806d6201fbca9bf09b2e8e0e0d4ec9 *R/internalValidators.R
d5adf29a7b033c0c7c54eff13df2fe87 *R/methods.R
99430002b9b700eb789bb007c9774924 *R/normalizeBiologicalBiases.R
3073883bc5e4ce6ddfc118339b7f3b8a *R/normalizeDistanceEffect.R
e6e72c05083baeaa3fd14b646adee583 *R/normalizeTechnicalBiases.R
c2150a9be4d6987d297d0cec643447f3 *R/plotCentroids.R
376a6cffba099ca5867cf5996473e69f *R/plotCompartmentChanges.R
fcf373e6593a1b40b71689c1766f6cad *R/plotCompartments.R
47dd9f99f127c07c4bfe3a7f66205dfe *R/plotConcordanceDifferences.R
7fb3b61d916ef9f3cdea638108745a70 *R/plotConcordances.R
2e7ca774ffaedb784ea0a919ab41c3c7 *R/plotDistanceEffect.R
3d0b168a1d61c152f8bd71bfc246c798 *R/plotInteractions.R
bc6d112adf9a1cb84d29b9ea9d8a157c *R/plotSelfInteractionRatios.R
7a193815f3deee23596e4484ed3e23ba *R/reduceDataSet.R
79803f6ff1be94bdd9bb92f7d19197bc *R/sanityChecks.R
a8f612ad232765a8f03762270fbdb9a7 *R/zzz.R
c9cfd34188a3d996890b0c560aafd736 *README.md
f727ca8e46fcffd36cf4c8b82ebe57c4 *inst/extdata/liver_18_10M.hic
1410a0900a7697c825c35fb839a47783 *inst/extdata/liver_18_10M.mcool
d4c12fd2f88aaa2a9d4dd09341f1d079 *inst/extdata/liver_18_10M_500000.bed
8d5864f1e6e3412a75ce67d1299978d6 *inst/extdata/liver_18_10M_500000.cool
a4045665a89ddefd2d6e757ed19ae21b *inst/extdata/liver_18_10M_500000.matrix
79d4349798eb216e7bf52f7fd6b99983 *inst/extdata/liver_18_10M_500000.tsv
583ad92ba4172e8bc12a9bf3966cd3f7 *man/detectCompartments.Rd
3b975c74e180231cf35efe6a81d9baf7 *man/filterSmallChromosomes.Rd
a31905957f4972880f24fc6c54603074 *man/filterSparseReplicates.Rd
5b93db211b4b84696ddad9e89c79e40d *man/filterWeakPositions.Rd
90dbcde434f68c2257327f876aca31cf *man/normalizeBiologicalBiases.Rd
1660de0b17e3c24743e5e7229be94ac7 *man/normalizeDistanceEffect.Rd
e67b2ba65805dbdada6a831529f583f2 *man/normalizeTechnicalBiases.Rd
bfd9e3553a0b759f92c5d8135282a5d0 *man/plotCentroids.Rd
879dfdcb2616c30776f2a1e59c21fc61 *man/plotCompartmentChanges.Rd
aeee4150e62297cd14cb09267c092ca0 *man/plotCompartments.Rd
4fdabea5070d313cb7523f873e008921 *man/plotConcordanceDifferences.Rd
ef0674420e486ff32315c56b2c82ad45 *man/plotConcordances.Rd
e954b5a3034f19973ecd96cceb43475a *man/plotDistanceEffect.Rd
b1c789c047d99262b5899bb8fb32a58a *man/plotInteractions.Rd
1b112b9bdf06f7b7c427954ae353b330 *man/plotSelfInteractionRatios.Rd
8a8d0e197e34e74255eb32ccb53887c3 *src/Makevars
8c952662431bcc3241348278ee8f3ec8 *src/RcppExports.cpp
1a1fb33d6d8da480ef8281bab6c68727 *src/constrainedClustering.cpp
db5b1bec918e4b82d4bcc511e72f1943 *tests/testthat.R
34b9f364ed53feb0ab56aa63f2c3f477 *tests/testthat/test-detectCompartments.R
307e2aae1561a5b20d74e5a85bafc8be *tests/testthat/test-filterSmallChromosomes.R
ddb1e9caade8dafede5a5a43bb58cb63 *tests/testthat/test-filterSparseReplicates.R
2c705388bb663526a494a7bcca5eb188 *tests/testthat/test-filterWeakPositions.R
ec5be098aa24bf7b37a7be251ce17687 *tests/testthat/test-normalizeBiologicalBiases.R
5d94256ad81a1656deec25dd26269805 *tests/testthat/test-normalizeDistanceEffect.R
6f30e9691b7d0ee32bfc9c2d05f7b8fe *tests/testthat/test-normalizeTechnicalBiases.R
67e20ddd7a7d9eb3ce1d7c156c7f42ec *tests/testthat/test-plotCentroids.R
28f6657264c9165b548b7f5b637342fa *tests/testthat/test-plotCompartmentChanges.R
5dceb304ca5437d4edfe1b73b8a3324f *tests/testthat/test-plotCompartments.R
e4f13a24464e1c01a2b14273c45f6f1a *tests/testthat/test-plotConcordanceDifferences.R
db9c9bea71c4096117ffbab00eb9708f *tests/testthat/test-plotConcordances.R
e4e3cb41349715c49dc2a75a2e86c2e3 *tests/testthat/test-plotDistanceEffect.R
8d2d244f6c5626fad939ff7090f037e8 *tests/testthat/test-plotInteractions.R
547d040f4dfe6730b8ec6e733d6b5a95 *tests/testthat/test-plotSelfInteractionRatios.R
4c1b61ed807f643ef2e63eb7f82af973 *vignettes/library.bib
