Package: HTAN
Type: Package
Title: Query and Retrieve Human Tumor Atlas Network (HTAN) Open-Access
        Data
Version: 0.99.1
Date: 2026-10-14
Authors@R: 
  c(person(given = "Sean",
           family = "Davis",
           role = c("aut", "cre"),
           email = "seandavi@gmail.com",
           comment = c(ORCID = "0000-0002-8991-6458")),
    person(given = "National Cancer Institute",
           role = "fnd",
           comment = "Grant U24CA289073"))
Description: A client for the open-access data of the Human Tumor Atlas
    Network (HTAN), Phase 1. File, biospecimen, clinical and provenance
    metadata are queried locally from a versioned parquet snapshot of the
    ISB-CGC HTAN BigQuery release tables, through DuckDB and dbplyr, with no
    Google account. Open-access files are downloaded from the CRDC General
    Commons (anonymous GA4GH DRS) or Synapse (personal access token), and
    common HTAN file formats are read into Bioconductor classes such as
    SingleCellExperiment, SpatialExperiment and MultiAssayExperiment.
License: MIT + file LICENSE
URL: https://github.com/seandavi/HTAN, https://seandavi.github.io/HTAN/
BugReports: https://github.com/seandavi/HTAN/issues
Depends: R (>= 4.6.0)
SystemRequirements: Quarto command line tool
        (<https://github.com/quarto-dev/quarto-cli>).
Imports: BiocFileCache, DBI, dbplyr, dplyr, duckdb, httr2, jsonlite,
        methods, MultiAssayExperiment, rlang, S4Vectors,
        SingleCellExperiment, SpatialExperiment, stats,
        SummarizedExperiment, tibble, tools, utils
Suggests: anndataR, BiocIO, ggplot2, knitr, Matrix, quarto, rhdf5,
        scales, scater, scrapper, SeuratObject, TENxIO, tidyr, testthat
        (>= 3.0.0), VisiumIO, withr
biocViews: DataImport, DataRepresentation, BiomedicalInformatics,
        SingleCell, Spatial, ThirdPartyClient, Transcriptomics
VignetteBuilder: quarto
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/HTAN
git_branch: devel
git_last_commit: 9efae6b
git_last_commit_date: 2026-10-20
Repository: Bioconductor 3.24
Date/Publication: 2026-11-11
NeedsCompilation: no
Packaged: 2026-11-11 23:40:49 UTC; biocbuild
Author: Sean Davis [aut, cre] (ORCID: <https://orcid.org/0000-0002-8991-6458>),
  National Cancer Institute [fnd] (Grant U24CA289073)
Maintainer: Sean Davis <seandavi@gmail.com>
