4c131a1a4dc62c67415a5898bcb1e410 *DESCRIPTION
e5e06c260b8132d71fd74e7d40e211a3 *NAMESPACE
9b663c57a1fa49b5acc26471fe157dfd *NEWS
ea8f89096b970384f03ac40594b16411 *R/AllClasses.R
ee4e9a872d5ce290dc32fca25e5c5a72 *R/AllGenerics.R
1766f5d47c9976a7d6c7154d6654e969 *R/GSVA-package.R
59574ae6e07d16e21f7b02a200a68ac6 *R/GSVA-pkg-defunct.R
0b8ee85c541b083a9cb044c736fe52a3 *R/GSVA-pkg-deprecated.R
5ad9245add08856eb9081bc9d7e6fbb5 *R/GsvaMethodParam.R
525182cfec8c9cba6c5ea22c3fdace33 *R/block_processing.R
6796f7b7a6db7118ef86b2dfa0dcdb11 *R/genesets.R
6176264f82cb9446dada6cfb04e58e0d *R/gsva-global.R
01dd97ba94050057a42168c6ef400ef2 *R/gsva.R
ea224cb00807affd03d5212ae2af87bd *R/gsvaRanks_serialization.R
b9dc820b43f9202894fb997cad429d32 *R/methods-ShinyApp.R
0e27b2f43e4ab5217ddd28759a554fff *R/plage.R
e22b2b84c5750551093f48cf58a320aa *R/spatial.R
eb956cffccd2aa3b9c842c6eee4baa96 *R/ssgsea.R
56dfcbae02a67bda3df6f14386b4b33c *R/utils.R
8c7268b494db910af199bfbbc8f1e80e *R/zscore.R
9c6efd7ddf2d97709f75552290099051 *R/zzz.R
37a7cdb041349afae7062bd64f253e21 *README.md
533839446f70bde34a1050627ce80586 *build/partial.rdb
1fd8d57459a61b2adf9082c3ab62d8f8 *build/vignette.rds
453d5f90bd6225b9bbf8fa9b9dd1e516 *cleanup
f1b7a918db657cba60304eb978b2450f *inst/CITATION
482c7bfa6e0cdbe02ffc00a6e33e1082 *inst/doc/GSVA.R
3a63b0e93ad22b4240e9eff12e0d3bc8 *inst/doc/GSVA.Rmd
7f66c86aca6370ccb1ac9b3bdf66253d *inst/doc/GSVA.html
cf268f3b3b63a7628d7256ee50b39825 *inst/doc/GSVA_proteomics.R
c2253258ccb3b55dac193f26baecd59c *inst/doc/GSVA_proteomics.Rmd
2b008b8d5f2fb285b736f1835009bef1 *inst/doc/GSVA_proteomics.html
72b462c8a159feff5345a6bf6f427f4a *inst/doc/GSVA_scRNAseq.R
571eedf60cd8fbfcdb56baa43868a8de *inst/doc/GSVA_scRNAseq.Rmd
4e718fd483c74b97ebcea384e4ac73aa *inst/doc/GSVA_scRNAseq.html
73eb8309279720edb362e967238efd1c *inst/scripts/spatial_data_for_example_code.R
bf968c2f1b5abd82360ced0ad33aae9e *inst/shinyApp/argumentsDataModule.R
25e2b694159c4e7d07f774614d9a3c58 *inst/shinyApp/closeModule.R
dc214dc088b1cd01628804b5296afb06 *inst/shinyApp/downloadModule.R
9cdb81086c4211775369cd3474d469e8 *inst/shinyApp/geneSetsModule.R
2c65b8e76c0322d7ed8ee293f2c898ec *inst/shinyApp/global.R
864045a809dcb3b5279972f874e20318 *inst/shinyApp/matrixModule.R
15da683e3de9cbf03c45be58a0de0d41 *inst/shinyApp/modalGSVAModule.R
d767155a0a53077a837552b5a9537ce8 *inst/shinyApp/plot1_Module.R
56a93a0297bd15075a35e940e6718571 *inst/shinyApp/plot2_Module.R
7fb0745614ce1f6818ae24101df1f571 *inst/shinyApp/plot3_Module.R
b651b3e5eb4ace75f5358a3d900c8057 *inst/shinyApp/server.R
bed624bd4a37319dce3c5d3351299803 *inst/shinyApp/ui.R
c6fd28f6180768396f84bf00f43a644f *inst/shinyApp/www/GSVA.png
871bcb8b39094743ba2792a9e8f0017c *inst/shinyApp/www/style.css
bb9b2559d3237097e95c94e51143f237 *inst/unitTests/test_genesets.R
54975cbefdcc498de5e719e481be5e16 *inst/unitTests/test_gsvaCcode.R
47f49b835a4798777a1cfe85eb20a67d *inst/unitTests/test_gsvaRanks.R
f0dbf1a2d25349f19d54ed4a4d9e0ad8 *inst/unitTests/test_inputdatacontainers.R
b1203b2e31b8460ac1040b3a85bcde11 *inst/unitTests/test_mainAPI.R
b87dce851b3b8aa7af18130d3efee043 *inst/unitTests/test_navalues.R
cc920f6219f063864c7724d63377c234 *inst/unitTests/test_ondisk.R
03f7475515f0ff131bc2a91a596f50e9 *inst/unitTests/test_parallel.R
e1353a33259c9cbd3c25604466b93c74 *inst/unitTests/test_params.R
3940d53979e02e1d768343072963c4a9 *inst/unitTests/test_ranksserialization.R
94258044d7257d2019ab0397e424eb29 *inst/unitTests/test_sparse.R
5971527d8d0dad5929fddcaa6f288132 *inst/unitTests/test_spatial.R
9775e961ead52fbedfcc2aa117c2f888 *inst/unitTests/test_ssgsea.R
dccd81e67deece23e396e51881156eb5 *man/GSVA-pkg-defunct.Rd
9af6f778ba2ccaed56f5f8e0800f0b13 *man/GSVA-pkg-deprecated.Rd
1bd1563c5d1926edbe4f769720afeee9 *man/GsvaExprData-class.Rd
92ea07497bde8581dfd1b4100ae90377 *man/GsvaGeneSets-class.Rd
e4717fdc446a7ccc4fd178e770c17bb9 *man/GsvaMethodParam-class.Rd
f0b589edea0ec231ac4ce63263707a7f *man/computeGeneSetsOverlap.Rd
68ae87f81564dbddbf1e69b5999a8d65 *man/deduplicateGeneSets.Rd
7e46d890bd243147c0b792340742cde2 *man/filterGeneSets.Rd
80f333be69a199a08a8c6557af4d76a8 *man/geneIdsToGeneSetCollection.Rd
5f7e70b3ba93095134f4aa8b679d51f6 *man/geneSets.Rd
884fc78884384798a5479a7d1df11161 *man/gsva.Rd
6ce181dc644dc0530ac154ef6b650fb5 *man/gsvaAnnotation.Rd
5a26fbf4f086594e8b8daf43a0907b61 *man/gsvaEnrichment.Rd
d75cf6fdddde1afcd5c573e96facbfe4 *man/gsvaParam-class.Rd
e24d420164707d691c8a130766344323 *man/gsvaRanks.Rd
a9d01a20a03dee1e668e2bdff2ad41f6 *man/gsvaRanks_serialization.Rd
e16143e4afa84c18f4d96e25091f8c69 *man/guessGeneIdType.Rd
c3d8987b5e4eaf2530fb956cd80e4b0a *man/igsva.Rd
71bb2c6b69515d627da45f1e2155cd35 *man/plageParam-class.Rd
80f36344827c81405833759736906271 *man/readGMT.Rd
2b128356de2eeb9acc22aae5d87c13f1 *man/spatCor.Rd
b39318c13e02db745e6879c634c6aeff *man/ssgseaParam-class.Rd
3935bbefceb0d3c91cbd970d1c40dec3 *man/zscoreParam-class.Rd
d7a0d33542989d75126998823ef89850 *src/ecdfvals.c
a2eaa6dbecb734ee0452daa6a1ac5732 *src/kcdfvals.c
c090d834965cac8eeae3c320fe681f6b *src/kernel_estimation.c
8d3fe1eb30324c041858cb2cbba8b1a9 *src/ks_test.c
35fb6df6e691169232f8b1c5a11e5522 *src/register_cmethods.c
2b9a63035e8455c379929d64261c3f52 *src/row_rngs_nzrngs.c
863a03890777b26074b76da2e983892a *src/utils.c
f2310c7773e0506a7998fe8de54969ac *tests/runTests.R
0f0b2b311b69698b52532c4cbf123b15 *tests/test_gsva_newapi.R
8c29672b60d2f44b17bb143e0be9ed20 *tests/test_gsva_newapi.Rout.save
1acc9a45221e1755a3561b5e56b2495e *tests/test_plage_newapi.R
758da4dc726ec788f89f741aad811027 *tests/test_plage_newapi.Rout.save
f9e8c5538f10663ad3b18cfbc7055b71 *tests/test_ssgsea_newapi.R
19da3a1db67ab043c5ffa5f8ba84e2b0 *tests/test_ssgsea_newapi.Rout.save
558b265dc798838662e1e214a3155035 *tests/test_zscore_newapi.R
17ef6b670e8c0334f9c456df21991b7a *tests/test_zscore_newapi.Rout.save
3a63b0e93ad22b4240e9eff12e0d3bc8 *vignettes/GSVA.Rmd
8993cbf0d5735cd050880dfdfe727e1a *vignettes/GSVA.bib
c2253258ccb3b55dac193f26baecd59c *vignettes/GSVA_proteomics.Rmd
571eedf60cd8fbfcdb56baa43868a8de *vignettes/GSVA_scRNAseq.Rmd
7f8eb02c3a715cc27c9e6954bd8d3b38 *vignettes/methods.png
a407c8f86caaae0ecbe41d26a3e88319 *vignettes/webapp1.png
93e0a4fffed5119c01f62a4751d13f03 *vignettes/webapp2.png
