# Generated by roxygen2: do not edit by hand

export(ECLIPSE)
export(findThreeChainClones)
export(sceECLIPSE)
export(tcrArtifactDetect)
importFrom(VDJdive,clonoNames)
importFrom(VDJdive,clonoStats)
importFrom(VDJdive,readVDJcontigs)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,first)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,min_rank)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(rlang,.data)
importFrom(scRepertoire,combineExpression)
importFrom(scRepertoire,combineTCR)
importFrom(scRepertoire,createHTOContigList)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_length)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(tidyselect,all_of)
importFrom(tidyselect,everything)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
