09f23c0c1fee6431d726ac7469e56251 *DESCRIPTION
fa4254d54c58c3e289fa5a0c5e53ccf7 *NAMESPACE
bee1b2e126354047d2144c89edcbd773 *NEWS.md
894df934296dd01e3a26216740d984e0 *R/ECLIPSE-helpers.R
aee52bb95d8ab56f425ff1da7e923be9 *R/ECLIPSE-package.R
132f064c31fcb1abebb1937031b6c36f *R/ECLIPSE.R
94e76faba48afcc0a2a49fc6b374aa5f *R/data.R
b3dd2c78e4240fefd822693576627c18 *R/findThreeChainClones-helpers.R
239adbce1dffce2986767b3cdcc5ef6b *R/findThreeChainClones.R
6a8a74206439a1fcd46d97ea803f7362 *R/imports.R
5289102bb6985993ca7cd1e1f5191218 *R/sceECLIPSE.R
7d673cddc11069f57a6bd29b4059ac00 *R/tcrArtifactDetect.R
f5c65baceffd409497ceba4ab73c7c48 *README.md
51b99364f2a1593465dad41b569617ea *build/vignette.rds
63fbc628f13a01f8ccb92cf7c8da3433 *data/post_qc_contigs.rda
6fc8c52b79b9fe6f32d2582aa8efce44 *data/test_seurat.rda
fde732c2904f0ded5a25d6101d986c7a *data/test_seurat_with_tcr.rda
66ca4cb3070a7c74fd918d52095f11dd *data/unit_test_object.rda
57874044ab6b6334db49342c91751c0d *data/vignette_object.rda
79526dcdc71144d92d8947cc6513932b *inst/CITATION
8721ee2bf7f8de12930a64bc906d663f *inst/README.md
721daf13f06772e0a7e2db9375e26faf *inst/doc/ECLIPSE.R
74c3e141a8f2a18c4167629fcd959f1a *inst/doc/ECLIPSE.Rmd
a5e69a8e360f3879d03cc129005ff62d *inst/doc/ECLIPSE.html
b24d60d1b83e7a07252ddbebe4da95ea *inst/extdata/blank_csv.csv
03c8bc3492e77fa6b401c49e3502e9ed *inst/extdata/examples/D3B_all_contig_annotations.csv.gz
f8a4dfdba571f0903345b1d17db862fa *inst/extdata/examples/D5B_all_contig_annotations.csv.gz
ebb04c06770dac357c7eea538d1605a3 *inst/extdata/unit_tests/D5L/all_contig_annotations.csv.gz
897e45dd230ffa52dfe634d93960c9ac *inst/extdata/vignette/D3B/all_contig_annotations.csv.gz
4161ea5a2f99076ebed03f2ad1e41cb3 *inst/extdata/vignette/D3L/all_contig_annotations.csv.gz
2ee153077178d3540d5ed736a42512ad *inst/extdata/vignette/D5B/all_contig_annotations.csv.gz
60733fd34bcef9af422b6d5d26f784fc *inst/extdata/vignette/D5L/all_contig_annotations.csv.gz
8ea39840d93f325713f5e0970340d035 *inst/scripts/making_test_and_vignette_data.Rmd
4af3fa934713d7984304050a88aeb678 *man/ECLIPSE-package.Rd
421cf186de8cd95dc744dee9999f203d *man/ECLIPSE.Rd
00b34538b465971a5c85923140b14daf *man/dot-assignFinalClonotypes.Rd
e8826761e6bf2b33fbe4440d07f57e3b *man/dot-findMissingMonotypicChains.Rd
009b80f21da56f89fa24aabb94f1fb55 *man/dot-identifyThreeChainClones.Rd
6ca6bd2fca663a2ad31524c452b94a15 *man/dot-modifyThreeChainContigs.Rd
347fadcdcd3182fe4d656cb7e892cc5b *man/dot-qcFilterContigs.Rd
1593e8e8dc1c1aa41d8f37b52a73c024 *man/dot-readContigs.Rd
3577fa71cd30e0bce9fb23db90879058 *man/dot-reformatSeuratObject.Rd
78dfdbf924aa0e09d1bbe1abb2e89d7e *man/dot-runVDJdive.Rd
7eaa39b37593eadb816d193614964d62 *man/findThreeChainClones.Rd
93068888856a229ee6df1296f90229c5 *man/post_qc_contigs.Rd
dc8eae9db77be751c992ce7a91461140 *man/sceECLIPSE.Rd
ae00d6c05e358641375a656a9a22e2cd *man/tcrArtifactDetect.Rd
71f6c8cc8b10e1fa76a498aa67146467 *man/test_seurat.Rd
3046eee4338dc8b17b88723dabf45ffd *man/test_seurat_with_tcr.Rd
eaa00fe7bde78459e22d93bbcbf643de *man/unit_test_object.Rd
5d06503f4102ce1a6243279e8a0ab7e6 *man/vignette_object.Rd
eda735636175b480718e68b5684175b2 *tests/testthat.R
6c9697fd90e8850f17ecab240df78b78 *tests/testthat/test-ECLIPSE.R
74c3e141a8f2a18c4167629fcd959f1a *vignettes/ECLIPSE.Rmd
