# Generated by roxygen2: do not edit by hand

export("common_precision<-")
export("genewise_precision<-")
export(common_precision)
export(dmDSdata)
export(dmFilter)
export(dmFit)
export(dmPrecision)
export(dmSQTLdata)
export(dmTest)
export(genewise_precision)
export(mean_expression)
export(plotData)
export(plotPValues)
export(plotPrecision)
export(plotProportions)
export(proportions)
export(results)
export(samples)
exportMethods("$")
exportMethods("[")
exportMethods("[[")
exportMethods("colnames<-")
exportMethods("common_precision<-")
exportMethods("genewise_precision<-")
exportMethods("names<-")
exportMethods("rownames<-")
exportMethods(coefficients)
exportMethods(colnames)
exportMethods(common_precision)
exportMethods(counts)
exportMethods(design)
exportMethods(dim)
exportMethods(dmFilter)
exportMethods(dmFit)
exportMethods(dmPrecision)
exportMethods(dmTest)
exportMethods(elementNROWS)
exportMethods(genewise_precision)
exportMethods(length)
exportMethods(mean_expression)
exportMethods(names)
exportMethods(ncol)
exportMethods(nrow)
exportMethods(plotData)
exportMethods(plotPValues)
exportMethods(plotPrecision)
exportMethods(plotProportions)
exportMethods(proportions)
exportMethods(results)
exportMethods(rownames)
exportMethods(samples)
import(BiocGenerics)
import(BiocParallel)
import(GenomicRanges)
import(edgeR)
import(methods)
importFrom(IRanges,width)
importFrom(S4Vectors,
  elementNROWS,
  queryHits,
  subjectHits
)
importFrom(ggplot2,
  aes_string,
  coord_cartesian,
  element_blank,
  element_text,
  geom_bar,
  geom_boxplot,
  geom_histogram,
  geom_hline,
  geom_jitter,
  geom_line,
  geom_point,
  geom_ribbon,
  geom_text,
  geom_vline,
  ggplot,
  ggtitle,
  guide_colorbar,
  guide_legend,
  guides,
  position_dodge,
  position_jitterdodge,
  scale_colour_gradient,
  scale_colour_manual,
  scale_fill_manual,
  scale_x_discrete,
  theme,
  theme_bw,
  xlab,
  ylab
)
importFrom(limma,nonEstimable)
importFrom(reshape2,melt)
importFrom(stats,
  aggregate,
  complete.cases,
  constrOptim,
  loess,
  loess.control,
  median,
  model.matrix,
  na.omit,
  nlm,
  nlminb,
  optim,
  optimHess,
  optimize,
  p.adjust,
  pchisq,
  predict,
  quantile,
  runif
)
importFrom(utils,
  head,
  tail
)
