addFeatureStats         Add feature statistics
convert_to_SCE          Convert Sparse Matrix to SingleCellExperiment
                        object
ensureCountsFirst       Ensure counts assay is first
getCounts               Get counts from Single Cell Experiment object
global                  simPIC: Simulate single-cell ATAC-seq data
newsimPICcount          newsimPICcount
plot_theme              Custom theme for ggplot2
rbindMatched            Bind rows (matched)
selectFit               Select fit
setsimPICparameters     Set simPIC parameters
simPICEstBCV            Estimate simPIC Biological Coefficient of
                        Variation parameters
simPICMicrogliaExample
                        Run the Packaged Microglia splatPop Example
simPICcompare           Compare SingleCellExperiment objects
simPICcount             The simPICcount class
simPICestimate          Estimate simPIC simulation parameters
simPICestimateLibSize   Estimate simPIC library size parameters
simPICestimatePeakMean
                        Estimate simPIC peak means
simPICestimateSparsity
                        Estimate sparsity
simPICget               Get a single simPICcount parameter
simPICgetparameters     Get parameters
simPICplotBlusterComparison
                        Plot Poptrial-Style PCA, Silhouette, and Purity
                        Comparisons
simPICplotPopulationPCA
                        Plot Population-Style PCA Summaries for Real
                        Data
simPICsimCellMeans      Simulate cell means
simPICsimulate          simPIC simulation
simPICsimulateBCVMeans
                        Simulate BCV means
simPICsimulateLibSize   Simulate simPIC library sizes
simPICsimulatePeakMean
                        Simulate simPIC peak means
simPICsimulateTrueCounts
                        Simulate true counts
simPICsimulateTrueCountsGroups
                        Simulate true counts groups
simPICsimulatemultiDA   Simulate group differential accessibility
splatPopEstimatePeak    Estimate Peak-Based splatPop Parameters
splatPopSimulatePeak    Simulate Peak-Based Population Data with
                        splatPop
