annotateRanges	annotateRanges
annotateRanges,profileplyr-method	annotateRanges
annotateRanges_great	annotateRanges_great
annotateRanges_great,profileplyr-method	annotateRanges_great
as_profileplyr	as_profileplyr
BamBigwig_to_chipProfile	BamBigwig_to_chipProfile
c,ChIPprofile-method	c-ChIPprofile-method
c,profileplyr-method	profileplyr
chipExampleBig	chipExampleBig
ChIPprofile-class	ChIPprofile-class
clusterRanges	clusterRanges
clusterRanges,profileplyr-method	clusterRanges
convertToEnrichedHeatmapMat	convertToEnrichedHeatmapMat
convertToEnrichedHeatmapMat,profileplyr-method	convertToEnrichedHeatmapMat
export_deepToolsMat	export_deepToolsMat
export_deepToolsMat,profileplyr-method	export_deepToolsMat
generateEnrichedHeatmap	generateEnrichedHeatmap
generateProfilePlot	generateProfilePlot
gene_list_character	gene_list_character
gene_list_dataframe	gene_list_dataframe
groupBy	groupBy
groupBy,profileplyr-method	groupBy
ik_Profiles	ik_Profiles
import_deepToolsMat	export_deepToolsMat
inherit_group_function	inherit_group_function
K27ac_GRlist_hind_liver_top5000	K27ac_GRlist_hind_liver_top5000
orderBy	orderBy
orderBy,profileplyr-method	orderBy
params	params
profileplyr-class	profileplyr
pwmToCoverage	pwmToCoverage
sampleData	sampleData
sampleData,profileplyr-method	sampleData
sampleData<-	sampleData
sampleData<-,profileplyr,DataFrame-method	sampleData
subsetbyGeneListOverlap	subsetbyGeneListOverlap
subsetbyRangeOverlap	subsetbyRangeOverlap
subset_GR_GL_common_top	subset_GR_GL_common_top
summarize	summarize
summarize,profileplyr-method	summarize
[,profileplyr,ANY,ANY,ANY-method	profileplyr
