8c8d39b5da4283ed9ec73b1f7b15f3e4 *CITATION
4db818adecf31ef75b96fe71c014dc3d *DESCRIPTION
4bba5c69d1d3d85d839ee69c88d1f3d7 *INDEX
a9881060788729a64679f6e0675e4c43 *Meta/Rd.rds
884c7d6ff2c8cec960c484fe0fbc17b9 *Meta/data.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
fcca6d9e1c536d047ff8ed04fc889b7a *Meta/hsearch.rds
c4c4e9c445534ebdcf3edbe63393d65e *Meta/links.rds
d46e6f01469bd1758534d919f87e9d71 *Meta/nsInfo.rds
eaee1f51d9afe6ae6f29d4b2588d1c3b *Meta/package.rds
945f74337121c92dd1c03fd278aad11a *Meta/vignette.rds
db1682e19ef2223eeaaf428756df6e02 *NAMESPACE
f2283b65a71fe786a5a8fa81c238ee23 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/mitoClone2
c510121139ca5b33dc1bc9e7d5f8f68c *R/mitoClone2.rdb
494f1ee3ef1d4ac84283ce825cb3654e *R/mitoClone2.rdx
3d85724f193997dde236c57d0a276026 *R/sysdata.rdb
8283356809c1520dfb715fd238de269e *R/sysdata.rdx
9fd8f027b23f12a39f0bb40160cf4da7 *README.md
178df663d9280ca1404decac15a7dbcb *SCITE/scite.exe
1c453e7d35264b67e77f4cfbfb1dccb2 *SCITEpkg/README.md
441da25a084dc0251f1c71675052160a *SCITEpkg/findBestTrees.cpp
24cc744163f05f56eb5c056754e016e2 *SCITEpkg/matrices.cpp
0c30d07b4f2f505c9f2873296b68b464 *SCITEpkg/matrices.h
d9d3175fc3bcac7e74b8a775d72605be *SCITEpkg/mcmc.cpp
9722937e05c7a47bb4fc035113ec7e00 *SCITEpkg/mcmc.h
aa6bd10f34c6ca1d46c035e9bd523846 *SCITEpkg/mcmcBinTreeMove.cpp
92ed03d607076f8351ad238a4923e793 *SCITEpkg/mcmcBinTreeMove.h
187a3dc0b50d8d6d69a5798c8dad9a38 *SCITEpkg/mcmcTreeMove.cpp
02bfa00af6681e80acdd0d9e8d6a5997 *SCITEpkg/mcmcTreeMove.h
7da0281fff2e656e2fd1a97190877954 *SCITEpkg/output.cpp
2a487f9f13aacf18a6c10d5a68636348 *SCITEpkg/output.h
dae220a9427605c41d829adff55626a5 *SCITEpkg/rand.cpp
f7977efec0569ea7072ebd94edf710b8 *SCITEpkg/rand.h
274d3abd011a24aeae0f02838342c4e0 *SCITEpkg/scoreBinTree.cpp
d5c0fd453c381819d746d04a2e2728b4 *SCITEpkg/scoreBinTree.h
ab9d37be1f979babcc809c9c0017ab0f *SCITEpkg/scoreTree.cpp
6be789db89746497db22d86d1c1bd594 *SCITEpkg/scoreTree.h
fb3efad6b02e95889357e3903575c4b3 *SCITEpkg/treelist.cpp
6e55d843ff04d914068c3141c06268b4 *SCITEpkg/treelist.h
b0002b1dbf2f2e07e8fa19de18900a35 *SCITEpkg/trees.cpp
60d016269ce68fdccdd1b3e41e702717 *SCITEpkg/trees.h
94de6eede0bb3d09b555d715a6320291 *data/M_P1.RData
2ab3339a8be7a48ab1c39b147938b62e *data/M_P2.RData
47bc44afea9033a4ff5537ea6cdcbc70 *data/N_P1.RData
ca5a52c762e93455122542fb0812e45f *data/N_P2.RData
8a3a2f34ade205341bc549e64d4b5bea *doc/clustering.R
79c0200f3e458ba81b6c16c0f78d8961 *doc/clustering.Rmd
6ccb3c182a79c5f85692b7bf039ed884 *doc/clustering.html
74cd74d4873db2fb74032527cccfe35f *doc/index.html
a8243374423b75804232cae158b94feb *doc/overview.R
47e3b0300fc6960620925f505085b9fa *doc/overview.Rmd
7112920f3996458146a99cf8ad0538fa *doc/overview.html
29309a44ca1933f79ff6b197c3b677e6 *extdata/LudwigFig7.Rda
b8d2e5034b419ff6463937846aa1340b *extdata/example_counts.Rda
08e89c9f01505ff6184a275e21b6ca1c *extdata/mm10_10x.bam
15c920cc46edc7d2f16b609e7db26a48 *extdata/mm10_10x.bam.bai
583c9140a54366ac9120090fa8c0667f *extdata/sample_example1.RDS
9032a050509c0a7f2773a0fb8a446f38 *help/AnIndex
ef690e81a62caa01fd987409d9333321 *help/aliases.rds
2677d635d9e1b8086bdb5c34bf4beb56 *help/figures/logo.png
da58d812040af5384c58848a3ab8c6bb *help/mitoClone2.rdb
77501c2919db7abb578c65e014279968 *help/mitoClone2.rdx
aed0a9093fb5927eb6d2b86574beeec9 *help/paths.rds
96c052b9f8e25a4e12290b078988edc9 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
d4315b97ed8c42f00af4b6a3487afa84 *libs/x64/mitoClone2.dll
830d9ddceda6c66080845866a5151832 *libs/x64/symbols.rds
e99b3cf183e3d2a72c813c2b639ea583 *script/README
