+,lcmsPlotClass,function-method
                        Apply a function to an 'lcmsPlotClass' object
                        using the infix '+' operator
ExternalDataSource-class
                        External data source wrapper
MZmineFeatureListsSource
                        Create an MZmine data source from feature lists
MsDialPeaksSource       Create an MS-DIAL data source from peak lists
XcmsRawList             Create an 'XcmsRawList' object
XcmsRawList-class       A list of 'xcmsRaw' objects representing
                        multiple samples
create_xcms_raw_list    Create an 'XcmsRawList' from raw LC-MS files
get_XCMSnExp_object_example
                        Get an 'XCMSnExp' example object from the
                        'faahKO' dataset
iterate_plot_batches    Iterate on the batches of plots
lcmsPlot                Create an 'lcmsPlotClass' object
lcmsPlot-package        lcmsPlot: Comprehensive Liquid
                        Chromatography-Mass Spectrometry (LC-MS) data
                        visualisation package
lcmsPlotApp             Launch the lcmsPlot interactive Shiny app
lcmsPlotClass-class     Managing LC-MS data for visualisation
lcmsPlotDataContainer-class
                        A unified storing mechanism for LC-MS data
lp_arrange              Define the arrangement of chromatograms
lp_chromatogram         Define the chromatograms to plot
lp_compound_discoverer
                        Define the options to use when plotting LC-MS
                        data coming from Compound Discoverer results.
lp_facets               Define the plot's faceting
lp_get_plot             Get the underlying plot object.
lp_grid                 Define a gridded plot
lp_intensity_map        Define a 2D intensity map
lp_isolation_window     Visualise the isolation window for a precursor
                        fragmentation event
lp_labels               Define the labels of the plot
lp_layout               Define the plot layout
lp_legend               Define the legend layout
lp_mass_trace           Define the mass trace to plot
lp_peak_density         Plot the peak density for one or more m/z
                        features
lp_purity_distribution
                        Plot the distribution of precursor ion purity
                        scores per sample
lp_purity_overlay       Overlay precursor ion purity scores on a
                        chromatogram
lp_purity_timeline      Plot precursor ion purity scores as a timeline
lp_rt_diff_plot         Generate the retention time difference plot
                        between raw and adjusted datasets
lp_rt_line              Define a vertical line on a retention time
                        value
lp_spectra              Define the spectra to plot
lp_total_ion_current    Define the total ion current (TIC)
next_plot               Move to the next plot object (batch-mode)
show,ExternalDataSource-method
                        Show a summary of an instance of class
                        'ExternalDataSource'
show,XcmsRawList-method
                        Show a summary of an 'XcmsRawList' object
show,lcmsPlotClass-method
                        Plot the 'lcmsPlotClass' object
show,lcmsPlotDataContainer-method
                        Show a summary of an instance of class
                        'lcmsPlotDataContainer'
