clusterScoring          Score CDR3 clusters using the GLIPH or GLIPH2
                        algorithm
deNovoTCRs              Generate de novo TCR sequences
findMotifs              Find continuous and discontinuous sequence
                        motifs
gTRB                    Germline TCR-beta CDR3 fragments
getGLIPHreference       Get or download the immGLIPH reference list
getRandomSubsample      Draw a stratified random subsample from the
                        reference repertoire
gliph_input_data        Example TCR input data
gliph_sce               Example SingleCellExperiment with TCR clonal
                        information
loadGLIPH               Load saved GLIPH results from disk
plotNetwork             Visualize TCR convergence group network
ref_cluster_sizes       Cluster size probabilities in naive reference
                        repertoire
reference_list          GLIPH reference repertoire list (external data)
runGLIPH                Run the GLIPH or GLIPH2 TCR clustering
                        algorithm
