# Fast functional enrichment for interactive applications

## Documentation for package ‘fenr’ version 1.11.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

enrichment_interactive | Small Shiny app serving as example for fast enrichment
exmpl_all | Example set of background genes.
exmpl_sel | Example set of selected genes.
fetch_bp | Get functional term data from BioPlanet
fetch_go | Get Gene Ontology (GO) data
fetch_go_species | Find all species available from geneontology.org
fetch_kegg | Get functional term data from KEGG
fetch_kegg_species | Find all species available from KEGG
fetch_reactome | Get functional term data from Reactome
fetch_reactome_species | List of available Reactome species
fetch_terms_for_example | Create term data for interactive example
fetch_wiki | Get functional term data from WikiPathways
fetch_wiki_species | List of available WikiPathways species
functional_enrichment | Fast Functional Enrichment
get_feature_terms | Get terms annotating a given feature.
get_term_features | Get features annotated with a given term.
go | GO-terms data downloaded for the vignette.
go_species | GO species
prepare_for_enrichment | Prepare Term Data for Enrichment Analysis
remove_cache | Remove all cache
yeast_de | Differential expression results for yeast RNA-seq.