B-cell Hybrid Immune Variant Engine
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Documentation for package ‘bHIVE’ version 0.99.8
Help Pages
| .defaultScalarArguments-method | bHIVE clustering through bluster |
| ActivationGate | ActivationGate |
| AINet | AINet |
| bHIVE | bHIVE: B-cell Hybrid Immune Variant Engine |
| bHIVE-method | bHIVE: B-cell Hybrid Immune Variant Engine |
| bHIVEmodel | bHIVE classification model for caret |
| bHIVEParam | bHIVE clustering through bluster |
| bHIVEParam-class | bHIVE clustering through bluster |
| ClassSwitcher | ClassSwitcher |
| clusterRows-method | bHIVE clustering through bluster |
| ConvergentSelector | ConvergentSelector |
| GerminalCenter | GerminalCenter |
| honeycombHIVE | honeycombHIVE: Multilayer AIS with optional gradient-based fine-tuning |
| honeycombHIVEmodel | Multilayered honeycombHIVE classification model for caret |
| IdiotypicNetwork | IdiotypicNetwork |
| ImmuneAlgorithm | ImmuneAlgorithm |
| ImmuneRepertoire | ImmuneRepertoire |
| MemoryPool | MemoryPool |
| Microenvironment | Microenvironment |
| refineB | refineB: Gradient-based fine-tuning for bHIVE antibodies with multiple loss functions and optimizers |
| SHMEngine | SHMEngine |
| show-method | bHIVE clustering through bluster |
| swarmbHIVE | Tune Hyperparameters for bHIVE (Swarm/Grid Search) |
| VDJLibrary | VDJLibrary |
| visualizeHIVE | Visualize bHIVE/honeycombHIVE Results |