Package: augere.solo
Version: 0.99.3
Date: 2026-04-11
Title: Automatic Generation of Single-Cell Analyses
Description: Implements pipelines for generating single-cell analysis
        reports in the augere framework. This uses scrapper to execute
        routine steps such as quality control, normalization, feature
        selection, clustering and marker detection. We also implement a
        pipeline for automatic cell type annotation against a labelled
        reference with SingleR. Each pipeline function generates a
        self-contained Rmarkdown report with all of the steps required
        to reproduce its analysis.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: augere.core, scrapper, scater
Suggests: testthat, knitr, rmarkdown, BiocStyle, BiocGenerics,
        S4Vectors, IRanges, GenomicRanges, SummarizedExperiment,
        SingleCellExperiment, scRNAseq, SingleR, celldex, jsonlite
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/augere-bioinfo/augere.solo
BugReports: https://github.com/augere-bioinfo/augere.solo/issues
biocViews: WorkflowManagement, ReportWriting, SingleCell
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libwebp-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 22:32:53 UTC
RemoteUrl: https://github.com/bioc/augere.solo
RemoteRef: HEAD
RemoteSha: 51e31e9991745bcabbb31b2e9fa25407216f9546
NeedsCompilation: no
Packaged: 2026-05-15 06:38:41 UTC; root
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; ; 2026-05-15 07:00:08 UTC; windows
