Package: augere.de
Version: 0.99.2
Date: 2026-04-11
Title: Automatic Generation of Differential Expression Analyses
Description: Implements pipelines for generating differential
        expression analysis reports in the augere framework. This
        includes analyses with edgeR or voom-limma, with a variety of
        options for contrasts, blocking and covariates. Each pipeline
        function generates a self-contained Rmarkdown report with all
        of the steps required to reproduce the DE analysis.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: utils, methods, limma, edgeR, S4Vectors, augere.core,
        alabaster.se
Suggests: testthat, knitr, rmarkdown, BiocStyle, airway,
        SummarizedExperiment
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/augere-bioinfo/augere.de
BugReports: https://github.com/augere-bioinfo/augere.de/issues
biocViews: WorkflowManagement, ReportWriting, DifferentialExpression,
        Transcription
Config/pak/sysreqs: libssl-dev libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 22:19:21 UTC
RemoteUrl: https://github.com/bioc/augere.de
RemoteRef: HEAD
RemoteSha: 9c39bb43f273502229031d890db102cf306b972b
NeedsCompilation: no
Packaged: 2026-05-15 06:35:02 UTC; root
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; ; 2026-05-15 06:37:09 UTC; windows
