Package: augere.core
Version: 0.99.3
Date: 2026-04-11
Title: Core Utilities for Automatically Generated Reports
Description: Provides utility functions for automatic generation of
        reports in the augere framework. This mostly involves parsing
        and dynamically editing Rmarkdown files, controlling inputs
        into the augere pipelines. Each pipeline generates and executes
        a self-contained Rmarkdown file for a common bioinformatics
        analysis; see downstream packages like augere.de and
        augere.screen for examples of some analysis pipelines.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: utils, grDevices
Suggests: testthat, knitr, rmarkdown, BiocStyle, limma, edgeR, airway,
        S4Vectors, SummarizedExperiment, jsonlite, alabaster.base
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
biocViews: WorkflowManagement, ReportWriting
URL: https://github.com/augere-bioinfo/augere.core
BugReports: https://github.com/augere-bioinfo/augere.core/issues
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 22:17:52 UTC
RemoteUrl: https://github.com/bioc/augere.core
RemoteRef: HEAD
RemoteSha: 892e35cd9e777f8a1b3a59daef63b6c227b906b4
NeedsCompilation: no
Packaged: 2026-05-15 06:34:20 UTC; root
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; ; 2026-05-15 06:35:44 UTC; windows
