Package: TSENAT
Type: Package
Title: Tsallis Entropy Analysis Toolbox
Version: 0.99.28
Authors@R: person(given = "Cristóbal", family = "Gallardo Alba", role = c("aut", "cre"), email = "gallardoalba@pm.me", comment=c(ORCID="0000-0002-5752-2155"))
Description: Quantifies and models isoform-usage complexity in RNA-seq
        data using Tsallis entropy, a scale-dependent diversity
        measure. By tuning the entropic index parameter (q), TSENAT
        examines transcriptome heterogeneity at different scales: rare
        variants (low q) or dominant isoforms (high q). It enables
        computing Tsallis entropy and Tsallis divergence from
        transcript-level estimates, comparing measures between
        conditions, testing for differences, and visualizing
        scale-dependent complexity via q-curves.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.5.0)
Imports: SummarizedExperiment, methods, stats, ggplot2, withr,
        BiocParallel, matrixStats, mgcv, geepack, pheatmap, cowplot,
        dplyr, tidyr, S4Vectors, rlang, Rcpp, memoise, digest, readr
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown, BiocStyle, kableExtra, patchwork,
        covr, RColorBrewer, gamsel, glmmTMB, glmnet, gridExtra, nlme,
        fdrtool, MASS, SplicingFactory, devtools, microbenchmark,
        gtable, e1071
VignetteBuilder: knitr
URL: https://gallardoalba.github.io/TSENAT
BugReports: https://github.com/gallardoalba/TSENAT/issues
biocViews: Transcriptomics, RNASeq, DifferentialSplicing,
        AlternativeSplicing, TranscriptomeVariant, GeneExpression,
        DifferentialExpression
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libicu-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-19 09:52:40 UTC
RemoteUrl: https://github.com/bioc/TSENAT
RemoteRef: HEAD
RemoteSha: 665e332458cb442d1da7e4e50d89b06a14e87be7
NeedsCompilation: yes
Packaged: 2026-07-20 15:44:19 UTC; root
Author: Cristóbal Gallardo Alba [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5752-2155>)
Maintainer: Cristóbal Gallardo Alba <gallardoalba@pm.me>
Built: R 4.6.1; x86_64-w64-mingw32; 2026-07-20 15:48:30 UTC; windows
Archs: x64
