STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

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Documentation for package ‘STRINGdb’ version 2.25.4

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS

Help Pages

coeffOfvar	coeffOfvar
delColDf	delColDf
diff_exp_example1	example of microarray data (data processed from GEO GSE9008)
downloadAbsentFile	downloadAbsentFile
downloadAbsentFileSTRING	downloadAbsentFileSTRING
get_api_key	get_api_key
get_enrichment	get_enrichment
get_values_ranks_enrichment	get_values_ranks_enrichment
get_values_ranks_results	get_values_ranks_results
get_values_ranks_status	get_values_ranks_status
interactions_example	example of a protein-protein interactions sorted data frame
map	map
multi_map_df	multi_map_df
renameColDf	renameColDf
STRINGdb	Class '"STRINGdb"'
STRINGdb-class	Class '"STRINGdb"'
submit_values_ranks_enrichment	submit_values_ranks_enrichment
\S4method{add_diff_exp_color}{STRINGdb}	add_diff_exp_color
\S4method{add_proteins_description}{STRINGdb}	add_proteins_description
\S4method{get_aliases}{STRINGdb}	get_aliases
\S4method{get_annotations_desc}{STRINGdb}	get_annotations_desc
\S4method{get_annotations}{STRINGdb}	get_annotations
\S4method{get_api_key}{STRINGdb}	get_api_key
\S4method{get_bioc_graph}{STRINGdb}	get_bioc_graph
\S4method{get_clusters}{STRINGdb}	get_clusters
\S4method{get_enrichment_figure}{STRINGdb}	get_enrichment_figure
\S4method{get_enrichment}{STRINGdb}	get_enrichment
\S4method{get_geneset_description}{STRINGdb}	get_geneset_description
\S4method{get_graph}{STRINGdb}	get_graph
\S4method{get_homologs_besthits}{STRINGdb}	get_homologs_besthits
\S4method{get_interactions}{STRINGdb}	get_interactions
\S4method{get_interaction_partners}{STRINGdb}	get_interaction_partners
\S4method{get_link}{STRINGdb}	get_link
\S4method{get_neighbors}{STRINGdb}	get_neighbors
\S4method{get_paralogs}{STRINGdb}	get_paralogs
\S4method{get_png}{STRINGdb}	get_png
\S4method{get_ppi_enrichment}{STRINGdb}	get_ppi_enrichment
\S4method{get_proteins}{STRINGdb}	get_proteins
\S4method{get_subnetwork}{STRINGdb}	get_subnetwork
\S4method{get_summary}{STRINGdb}	get_summary
\S4method{get_term_proteins}{STRINGdb}	get_term_proteins
\S4method{get_values_ranks_enrichment}{STRINGdb}	get_values_ranks_enrichment
\S4method{get_values_ranks_results}{STRINGdb}	get_values_ranks_results
\S4method{get_values_ranks_status}{STRINGdb}	get_values_ranks_status
\S4method{load_all}{STRINGdb}	load_all
\S4method{load}{STRINGdb}	load
\S4method{map}{STRINGdb}	map
\S4method{mp}{STRINGdb}	mp
\S4method{plot_network}{STRINGdb}	plot_network
\S4method{post_payload}{STRINGdb}	post_payload
\S4method{remove_homologous_interactions}{STRINGdb}	remove_homologous_interactions
\S4method{set_background}{STRINGdb}	set_background
\S4method{submit_values_ranks_enrichment}{STRINGdb}	submit_values_ranks_enrichment