bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
ac7775bb14e24b56a99bb3d550baabc8 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
9da9826b6ca1027ee9f2aa59edf16cbc *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
0a417073ec16b745732085bff61c8a3c *Meta/hsearch.rds
0098e33182e97f4975f0e22720d674a3 *Meta/links.rds
c01f5c799eb38631b86fe18fefcfe366 *Meta/nsInfo.rds
e580e73971361eaf39d6538d9f5da71f *Meta/package.rds
8533dc61c6b113d7825e891f1276b086 *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
f2b014d809547159ad158bb137a77b07 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
96010fb90bc422a4bcdc9f0a14228828 *R/GenomicAlignments.rdb
30856a26a4be6849206c4feb7c77f80f *R/GenomicAlignments.rdx
779e0034c6f577700614026cd90a618a *README.md
244300f607fd313bc0f1e12aac6fa8d3 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
299d5fd276d86d689d795a8ebeae8398 *doc/GenomicAlignmentsIntroduction.pdf
cfb9075601276b78b366f36d6f74cc95 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
345f9d0c0be800f58cbd6279ff122fa1 *doc/OverlapEncodings.pdf
ce6b7e63648a74109c4e351265c9eb26 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
b291b19303beb7ce1fb5cd3fff1996c0 *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
111d660eb9166747c920a9df9295bfa7 *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
794861a51731a6940ee1cd30569f7c26 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
acf3f5c0f0949061b245765fff2d386c *help/GenomicAlignments.rdb
bb54eddeadde624ce4123e1bd55e25e1 *help/GenomicAlignments.rdx
16bef17ed2d1d2b505b16909073dc406 *help/aliases.rds
6ead9def1e58a075083cdbd115fd43ac *help/paths.rds
364d377f4b395f92300182468d1845b9 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
44a0c5dbce231eef6d319f0bd8749006 *libs/x64/GenomicAlignments.dll
c69c8cccc9e735c1087f3b593f50a25e *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
