## R version 4.6.0 (2026-04-24)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Etc/UTC
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.17.0 BiocStyle_2.41.0
##
## loaded via a namespace (and not attached):
## [1] BiocIO_1.23.3
## [2] bitops_1.0-9
## [3] ggplotify_0.1.3
## [4] filelock_1.0.3
## [5] tibble_3.3.1
## [6] polyclip_1.10-7
## [7] enrichit_0.1.4
## [8] XML_3.99-0.23
## [9] lifecycle_1.0.5
## [10] httr2_1.2.2
## [11] lattice_0.22-9
## [12] MASS_7.3-65
## [13] magrittr_2.0.5
## [14] plotly_4.12.0
## [15] sass_0.4.10
## [16] rmarkdown_2.31
## [17] jquerylib_0.1.4
## [18] yaml_2.3.12
## [19] plotrix_3.8-14
## [20] otel_0.2.0
## [21] ggtangle_0.1.2
## [22] DBI_1.3.0
## [23] buildtools_1.0.0
## [24] RColorBrewer_1.1-3
## [25] lubridate_1.9.5
## [26] abind_1.4-8
## [27] GenomicRanges_1.65.0
## [28] purrr_1.2.2
## [29] BiocGenerics_0.59.6
## [30] RCurl_1.98-1.18
## [31] yulab.utils_0.2.4
## [32] tweenr_2.0.3
## [33] rappdirs_0.3.4
## [34] gdtools_0.5.1
## [35] IRanges_2.47.2
## [36] S4Vectors_0.51.3
## [37] enrichplot_1.33.0
## [38] ggrepel_0.9.8
## [39] tidytree_0.4.7
## [40] maketools_1.3.2
## [41] ChIPseeker_1.49.0
## [42] codetools_0.2-20
## [43] DelayedArray_0.39.3
## [44] DOSE_4.7.0
## [45] ggforce_0.5.0
## [46] tidyselect_1.2.1
## [47] aplot_0.2.9
## [48] UCSC.utils_1.9.0
## [49] farver_2.1.2
## [50] base64enc_0.1-6
## [51] matrixStats_1.5.0
## [52] stats4_4.6.0
## [53] BiocFileCache_3.3.0
## [54] Seqinfo_1.3.0
## [55] GenomicAlignments_1.49.0
## [56] jsonlite_2.0.0
## [57] systemfonts_1.3.2
## [58] tools_4.6.0
## [59] ggnewscale_0.5.2
## [60] treeio_1.37.0
## [61] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [62] Rcpp_1.1.1-1.1
## [63] glue_1.8.1
## [64] SparseArray_1.13.2
## [65] BiocBaseUtils_1.15.1
## [66] xfun_0.57
## [67] MatrixGenerics_1.25.0
## [68] GenomeInfoDb_1.49.1
## [69] dplyr_1.2.1
## [70] withr_3.0.2
## [71] BiocManager_1.30.27
## [72] fastmap_1.2.0
## [73] boot_1.3-32
## [74] caTools_1.18.3
## [75] digest_0.6.39
## [76] mime_0.13
## [77] timechange_0.4.0
## [78] R6_2.6.1
## [79] gridGraphics_0.5-1
## [80] seqPattern_1.45.0
## [81] GO.db_3.23.1
## [82] gtools_3.9.5
## [83] RSQLite_3.53.1
## [84] cigarillo_1.3.0
## [85] tidyr_1.3.2
## [86] generics_0.1.4
## [87] fontLiberation_0.1.0
## [88] data.table_1.18.4
## [89] rtracklayer_1.73.0
## [90] bsplus_0.1.5
## [91] httr_1.4.8
## [92] htmlwidgets_1.6.4
## [93] S4Arrays_1.13.0
## [94] scatterpie_0.2.6
## [95] downloadthis_0.5.0
## [96] pkgconfig_2.0.3
## [97] gtable_0.3.6
## [98] blob_1.3.0
## [99] S7_0.2.2
## [100] impute_1.87.0
## [101] XVector_0.53.0
## [102] sys_3.4.3
## [103] htmltools_0.5.9
## [104] fontBitstreamVera_0.1.1
## [105] scales_1.4.0
## [106] Biobase_2.73.1
## [107] png_0.1-9
## [108] ggfun_0.2.0
## [109] knitr_1.51
## [110] tzdb_0.5.0
## [111] reshape2_1.4.5
## [112] rjson_0.2.23
## [113] nlme_3.1-169
## [114] curl_7.1.0
## [115] cachem_1.1.0
## [116] stringr_1.6.0
## [117] BiocVersion_3.24.0
## [118] KernSmooth_2.23-26
## [119] parallel_4.6.0
## [120] AnnotationDbi_1.75.0
## [121] restfulr_0.0.16
## [122] pillar_1.11.1
## [123] grid_4.6.0
## [124] vctrs_0.7.3
## [125] gplots_3.3.0
## [126] tidydr_0.0.6
## [127] dbplyr_2.5.2
## [128] cluster_2.1.8.2
## [129] evaluate_1.0.5
## [130] readr_2.2.0
## [131] GenomicFeatures_1.65.0
## [132] cli_3.6.6
## [133] compiler_4.6.0
## [134] Rsamtools_2.29.0
## [135] rlang_1.2.0
## [136] crayon_1.5.3
## [137] labeling_0.4.3
## [138] plyr_1.8.9
## [139] fs_2.1.0
## [140] ggiraph_0.9.6
## [141] stringi_1.8.7
## [142] genomation_1.45.0
## [143] viridisLite_0.4.3
## [144] gridBase_0.4-7
## [145] BiocParallel_1.47.0
## [146] Biostrings_2.81.2
## [147] lazyeval_0.2.3
## [148] GOSemSim_2.39.0
## [149] fontquiver_0.2.1
## [150] Matrix_1.7-5
## [151] BSgenome_1.81.0
## [152] hms_1.1.4
## [153] patchwork_1.3.2
## [154] bit64_4.8.2
## [155] ggplot2_4.0.3
## [156] KEGGREST_1.53.0
## [157] SummarizedExperiment_1.43.0
## [158] AnnotationHub_4.3.0
## [159] igraph_2.3.1
## [160] memoise_2.0.1
## [161] bslib_0.11.0
## [162] ggtree_4.3.0
## [163] bit_4.6.0
## [164] ape_5.8-1