.describe_transcript_SE	describe_transcript-methods
.rotate_dimensions_se	dot-rotate_dimensions_se
adjust_abundance	adjust_abundance-methods
adjust_abundance,RangedSummarizedExperiment-method	adjust_abundance-methods
adjust_abundance,SummarizedExperiment-method	adjust_abundance-methods
aggregate_duplicates	aggregate_duplicates-methods
aggregate_duplicates,RangedSummarizedExperiment-method	aggregate_duplicates-methods
aggregate_duplicates,SummarizedExperiment-method	aggregate_duplicates-methods
as_matrix	as_matrix
as_SummarizedExperiment	as_SummarizedExperiment-methods
as_SummarizedExperiment,tbl_df-method	as_SummarizedExperiment-methods
check_if_counts_is_na	check_if_counts_is_na
check_if_duplicated_genes	check_if_duplicated_genes
cluster_elements	cluster_elements-methods
cluster_elements,RangedSummarizedExperiment-method	cluster_elements-methods
cluster_elements,SummarizedExperiment-method	cluster_elements-methods
deconvolve_cellularity	deconvolve_cellularity-methods
deconvolve_cellularity,RangedSummarizedExperiment-method	deconvolve_cellularity-methods
deconvolve_cellularity,SummarizedExperiment-method	deconvolve_cellularity-methods
describe_transcript	describe_transcript-methods
describe_transcript,RangedSummarizedExperiment-method	describe_transcript-methods
describe_transcript,SummarizedExperiment-method	describe_transcript-methods
fill_missing_abundance	fill_missing_abundance-methods
get_bibliography	get_bibliography-methods
get_bibliography,RangedSummarizedExperiment-method	get_bibliography-methods
get_bibliography,SummarizedExperiment-method	get_bibliography-methods
get_X_cibersort	get_X_cibersort
identify_abundant	identify_abundant-methods
identify_abundant,RangedSummarizedExperiment-method	identify_abundant-methods
identify_abundant,SummarizedExperiment-method	identify_abundant-methods
impute_missing_abundance	impute_missing_abundance-methods
impute_missing_abundance,RangedSummarizedExperiment-method	impute_missing_abundance-methods
impute_missing_abundance,SummarizedExperiment-method	impute_missing_abundance-methods
keep_abundant	keep_abundant
keep_abundant,RangedSummarizedExperiment-method	keep_abundant-RangedSummarizedExperiment-method
keep_abundant,SummarizedExperiment-method	keep_abundant-SummarizedExperiment-method
keep_variable	keep_variable-methods
keep_variable,RangedSummarizedExperiment-method	keep_variable-methods
keep_variable,SummarizedExperiment-method	keep_variable-methods
log10_reverse_trans	log10_reverse_trans
logit_trans	logit_trans
pivot_sample	pivot_sample-methods
pivot_sample,RangedSummarizedExperiment-method	pivot_sample-methods
pivot_sample,SummarizedExperiment-method	pivot_sample-methods
pivot_transcript	pivot_transcript-methods
pivot_transcript,RangedSummarizedExperiment-method	pivot_transcript-methods
pivot_transcript,SummarizedExperiment-method	pivot_transcript-methods
quantile_normalise_abundance	quantile_normalise_abundance-methods
quantile_normalise_abundance,RangedSummarizedExperiment-method	quantile_normalise_abundance-methods
quantile_normalise_abundance,SummarizedExperiment-method	quantile_normalise_abundance-methods
reduce_dimensions	reduce_dimensions-methods
reduce_dimensions,RangedSummarizedExperiment-method	reduce_dimensions-methods
reduce_dimensions,SummarizedExperiment-method	reduce_dimensions-methods
remove_redundancy	remove_redundancy-methods
remove_redundancy,RangedSummarizedExperiment-method	remove_redundancy-methods
remove_redundancy,SummarizedExperiment-method	remove_redundancy-methods
resolve_complete_confounders_of_non_interest	resolve_complete_confounders_of_non_interest
resolve_complete_confounders_of_non_interest,RangedSummarizedExperiment-method	resolve_complete_confounders_of_non_interest-methods
resolve_complete_confounders_of_non_interest,SummarizedExperiment-method	resolve_complete_confounders_of_non_interest-methods
rotate_dimensions	rotate_dimensions-methods
rotate_dimensions,RangedSummarizedExperiment-method	rotate_dimensions-methods
rotate_dimensions,SummarizedExperiment-method	rotate_dimensions-methods
scale_abundance	scale_abundance-methods
scale_abundance,RangedSummarizedExperiment-method	scale_abundance-methods
scale_abundance,SummarizedExperiment-method	scale_abundance-methods
scale_x_log10_reverse	scale_x_log10_reverse
scale_y_log10_reverse	scale_y_log10_reverse
test_differential_abundance	test_differential_abundance-methods
test_differential_abundance,RangedSummarizedExperiment-method	test_differential_abundance-methods
test_differential_abundance,SummarizedExperiment-method	test_differential_abundance-methods
test_differential_expression	test_differential_expression-methods
test_differential_expression,RangedSummarizedExperiment-method	test_differential_expression-methods
test_differential_expression,SummarizedExperiment-method	test_differential_expression-methods
test_gene_enrichment	test_gene_enrichment-methods
test_gene_enrichment,RangedSummarizedExperiment-method	test_gene_enrichment-methods
test_gene_enrichment,SummarizedExperiment-method	test_gene_enrichment-methods
test_gene_overrepresentation	test_gene_overrepresentation-methods
test_gene_overrepresentation,RangedSummarizedExperiment-method	test_gene_overrepresentation-methods
test_gene_overrepresentation,SummarizedExperiment-method	test_gene_overrepresentation-methods
test_gene_rank	test_gene_rank-methods
test_gene_rank,RangedSummarizedExperiment-method	test_gene_rank-methods
test_gene_rank,SummarizedExperiment-method	test_gene_rank-methods
test_stratification_cellularity,RangedSummarizedExperiment-method	test_stratification_cellularity-methods
test_stratification_cellularity,SummarizedExperiment-method	test_stratification_cellularity-methods
tximeta_summarizeToGene_object	tximeta_summarizeToGene_object
vignette_manuscript_signature_boxplot	vignette_manuscript_signature_boxplot
vignette_manuscript_signature_tsne	vignette_manuscript_signature_tsne
vignette_manuscript_signature_tsne2	vignette_manuscript_signature_tsne2
X_cibersort	X_cibersort
