# Automated gating pipeline for flow cytometry analysis to characterize the lineage, differentiation, and functional states of T-cells

## Documentation for package ‘staRgate’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

getBiexpTransformGS | Applies Biexpeonential Transformation using specifications in csv file provided at 'path_biexp_params'
getCompGS | Applies Compensation using specifications in csv file provided at 'path_comp_mat'
getDensityGates | Density gating of intensity values in 'marker' for each unique subset of 'subset_col'
getGatedDat | Attach indicator columns to 'intens_dat' based on gates provided in 'cutoffs'
getPerc | Calculate the percentage of positive cells for specific subpopulations