# Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression

## Documentation for package ‘scCompoundDE’ version 0.99.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

scCompoundDE-package | scCompoundDE: Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression
CDEResult | Constructor for CDEResult
CDEResult-class | CDEResult: Compound DE Result Container
compoundDE | Compound Differential Expression: Transcriptional and Compositional Decomposition
deTable | Accessor for the DE table in a CDEResult
deTable-method | Accessor for the DE table in a CDEResult
filterGenesBySource | Filter DE Genes by Source Classification
plotDecomposition | Scatter Plot of Transcriptional vs Compositional DE Scores
plotProportion | Stacked Bar Plot of Subtype Proportions per Condition
plotTCRatio | Histogram of TC_ratio Distribution
scCompoundDE | scCompoundDE: Compositional and Transcriptional Decomposition of Pseudo-Bulk Differential Expression
show-method | Show method for CDEResult
subtypeDE | Accessor for per-subtype DE results in a CDEResult
subtypeDE-method | Accessor for per-subtype DE results in a CDEResult
subtypeProportions | Accessor for subtype proportions in a CDEResult
subtypeProportions-method | Accessor for subtype proportions in a CDEResult
tcRatio | Accessor for TC_ratio vector in a CDEResult
tcRatio-method | Accessor for TC_ratio vector in a CDEResult