balance_dataset	internal
caret_model	caret_model
caret_model<-	internal
caret_model<-,scAnnotatR-method	internal
cell_type	cell_type
cell_type<-	cell_type-set
cell_type<-,scAnnotatR-method	cell_type
checkCaretModelValidity	internal
checkCellTypeValidity	internal
checkMarkerGenesValidity	internal
checkObjectValidity	internal
checkParentValidity	internal
checkPThresValidity	internal
check_parent_child_coherence	internal
classify_cells	classify_cells
classify_cells_sce	internal
classify_cells_seurat	internal
classify_clust	internal
construct_tag_vect	internal
delete_model	delete_model
download_data_file	internal
filter_cells	internal
load_models	load_models
make_prediction	internal
marker_genes	marker_genes
marker_genes<-	internal
marker_genes<-,scAnnotatR-method	internal
parent	parent
parent<-	internal
parent<-,scAnnotatR-method	internal
plant_tree	plant_tree
plot_roc_curve	plot_roc_curve
preprocess_sce_object	internal
preprocess_seurat_object	internal
process_parent_classifier	internal
p_thres	p_thres
p_thres<-	p_thres-set
p_thres<-,scAnnotatR-method	p_thres
save_new_model	save_new_model
scAnnotatR	scAnnotatR
select_marker_genes	internal
show,scAnnotatR-method	show
simplify_prediction	internal
subset_models	internal
test_classifier	test_classifier
test_classifier,scAnnotatR-method	test_classifier
test_classifier_from_mat	internal
test_classifier_sce	internal
test_classifier_seurat	internal
test_performance	internal
tirosh_mel80_example	tirosh_mel80_example
train_classifier	train_classifier
train_classifier_from_mat	internal
train_classifier_sce	internal
train_classifier_seurat	internal
train_func	internal
transform_to_zscore	internal
verify_parent	internal
