# Detection of Rare Aberrantly Methylated Regions in Array and NGS Data

## Documentation for package ‘ramr’ version 1.21.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

getAMR | Search for aberrantly methylated regions
getAMR.obsolete | [OBSOLETE] Search for aberrantly methylated regions
getUniverse | Merges, filters and outputs all genomic regions of a given 'GRanges' object
plotAMR | Plot aberrantly methylated regions
ramr.data | Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.samples | Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.tp.nonunique | Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
ramr.tp.unique | Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
simulateAMR | Simulate a set of aberrantly methylated regions
simulateData | Template-based simulation of methylation data sets
simulateData.obsolete | [OBSOLETE] Template-based simulation of methylation data sets