Package: meshes
Title: MeSH Enrichment and Semantic analyses
Version: 1.39.1
Authors@R: c(person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com",   role = c("aut", "cre")))
Description: Provides tools for MeSH (Medical Subject Headings)
        enrichment and semantic similarity analysis. The package uses
        MeSH term annotations linked to Entrez Gene identifiers through
        gendoo, gene2pubmed and RBBH, enabling over-representation
        analysis, gene set enrichment analysis and semantic comparison
        of gene lists or ranked expression profiles. It implements
        Resnik, Schlicker, Jiang, Lin and Wang similarity methods for
        comparing MeSH terms, genes and gene groups across more than 70
        species.
Depends: R (>= 4.1.0)
Imports: enrichit, gson, AnnotationDbi, GOSemSim (> 2.37.0), methods,
        utils, AnnotationHub, MeSHDbi, yulab.utils (>= 0.1.5)
Suggests: knitr, quarto
VignetteBuilder: quarto
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports: https://github.com/YuLab-SMU/meshes/issues
biocViews: Annotation, Clustering, MultipleComparison, Software
Encoding: UTF-8
LazyData: true
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-30 05:19:29 UTC
RemoteUrl: https://github.com/bioc/meshes
RemoteRef: HEAD
RemoteSha: 5b46b9de43d4ed33668e8ed61caf551dfd225c0b
NeedsCompilation: no
Packaged: 2026-06-30 13:14:38 UTC; root
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Built: R 4.6.1; ; 2026-06-30 13:17:19 UTC; unix
