check_files_exist	check_files_exist
check_thread_count	check_thread_count
Cpp_query_all	Cpp_query_all
Cpp_set_log_level	Cpp_set_log_level
Cpp_summarize_regions	Cpp_summarize_regions
get_df_input_regions	get_df_input_regions
get_df_string	get_df_string
get_granges_string	get_granges_string
get_log_level	set_log_level
get_regions_as_df	get_regions_as_df
get_string_input_regions	get_string_input_regions
get_threads	get_threads
htslib_version	htslib_version
make_mat	make_mat
make_mat_bsseq	make_mat_bsseq
make_mat_gr	make_mat
make_mat_se	make_mat
query_chroms	query_chroms
set_log_level	set_log_level
set_threads	set_threads
summarize_meth_regions	summarize_meth_regions
summarize_regions	summarize_regions
tabix	tabix
tabix_gr	tabix
tabix_raw	tabix
validate_log_level	validate_log_level
validate_summary_function	validate_summary_function
verify_aligner_or_stop	verify_aligner_or_stop
verify_files_or_stop	verify_files_or_stop
verify_filetype	verify_filetype
